Locus 2812

Sequence ID 2R_DroMel_CAF1
Location 9,799,387 – 9,799,484
Length 97
Max. P 0.500000
window4649

overview

Window 9

Location 9,799,387 – 9,799,484
Length 97
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 76.34
Mean single sequence MFE -29.77
Consensus MFE -12.09
Energy contribution -11.87
Covariance contribution -0.22
Combinations/Pair 1.27
Mean z-score -2.05
Structure conservation index 0.41
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9799387 97 + 20766785
ACUGUGCGCCGCUGUGCUCCCACGCUCCCUUAUCAGCCAU----GUCCGUCUGGCGCAGCCUUAUCUUAUCUCG-------GCCAUUUGGCC--AUUUGAUUUAGGGCAC
....((((((...(((....)))(((........)))...----........))))))((((((..(((....(-------(((....))))--...)))..)))))).. ( -31.40)
>DroPse_CAF1 36868 99 + 1
GC--C------UUUUGCUCCCACGCU---UUAUCAGCCGGGUGGGUCCGCCUGGCGCAGCCUUAUCUUAUCGCUUUCGCUAGCUUUUAGGGCACAUUUGAUUUAGAGUAC
..--.------..........((.((---..((((((((((((....))))))))...((((((.......(((......)))...)))))).....))))..)).)).. ( -30.90)
>DroSec_CAF1 37338 97 + 1
ACAGUGCGCCGCUGUGCUCCCACGCUCCCUUAUCAGCCAU----AUCCGUCUGGCGCAGCCUUAUCUUAUCUCG-------GCCAUUUGGCC--AUUUGAUUUAGGGCAC
....((((((...(((....)))(((........)))...----........))))))((((((..(((....(-------(((....))))--...)))..)))))).. ( -31.40)
>DroEre_CAF1 40399 95 + 1
GC--UGCGCUCCUACGCUCCCACGCUCCCUUAUCAGCCAU----GUCCGUCUGGCGCAGCCUUAUCUUAUCUCG-------GCCAUUUGGCC--AUUUGAUUUAGGGCAC
..--((((((...(((..(....(((........)))...----)..)))..))))))((((((..(((....(-------(((....))))--...)))..)))))).. ( -28.80)
>DroYak_CAF1 39041 87 + 1
GC--UGAGC--------UCCCACGCUCCCUUAUCAGCCAU----GUCCGUCUGGCGCAGCGUUAUCUUAUCUCG-------GCCAUUUGGCC--AUUUGAUUUAGGGCAC
((--.((((--------......))))(((.((((((((.----.......))))..................(-------(((....))))--...))))..))))).. ( -25.80)
>DroPer_CAF1 36836 99 + 1
GC--C------UUUUGCUCCCACGCU---UUAUCAGCCGGGUGGGUCCGCCUGGCGCAGCCUUAUCUUAUCGCCUUCGCUAGCUUUUAGGGCAAAUUUGAUUUAGAGUAC
..--.------..........((.((---..((((((((((((....))))))))...((((((.......((....)).......)))))).....))))..)).)).. ( -30.34)
>consensus
GC__UGCGC__CUGUGCUCCCACGCUCCCUUAUCAGCCAU____GUCCGUCUGGCGCAGCCUUAUCUUAUCUCG_______GCCAUUUGGCC__AUUUGAUUUAGGGCAC
.......................((((....((((((((............))))..........................(((....)))......))))...)))).. (-12.09 = -11.87 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:02 2006