| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,685,946 – 1,686,039 |
| Length | 93 |
| Max. P | 0.588262 |
| Location | 1,685,946 – 1,686,039 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 84.85 |
| Mean single sequence MFE | -18.77 |
| Consensus MFE | -17.90 |
| Energy contribution | -17.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.50 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1685946 93 + 20766785 UAUUUAA-----AAU-AAAAA---AAUUCGAAUACGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACA .......-----...-.....---...........(((....(((((.......))))).))).((((((.....)))))).((((........)))).... ( -17.90) >DroEre_CAF1 76458 93 + 1 UAUUUAA-----AAC-AAAAA---AGUGAAAGUCCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACA .......-----...-.....---.(((.......(((....(((((.......))))).))).((((((.....)))))).((((........))))))). ( -20.50) >DroPer_CAF1 96131 101 + 1 UAUAUAAGAAAAUACAAAUAAAAAAGA-UAUCUCCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACA ...........................-.......(((....(((((.......))))).))).((((((.....)))))).((((........)))).... ( -17.90) >consensus UAUUUAA_____AAC_AAAAA___AGU_AAAAUCCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACA ...................................(((....(((((.......))))).))).((((((.....)))))).((((........)))).... (-17.90 = -17.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:27 2006