| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,778,199 – 9,778,313 |
| Length | 114 |
| Max. P | 0.712172 |
| Location | 9,778,199 – 9,778,313 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 80.79 |
| Mean single sequence MFE | -41.84 |
| Consensus MFE | -27.56 |
| Energy contribution | -26.34 |
| Covariance contribution | -1.22 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.712172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9778199 114 - 20766785 GCUGCUGCCUGCAACGAGCAGCACACAUCAGACUUUGACCAGCGGCACCACCAUUGACAAGGAGCUGCAGGACAUCGCUCUGGGCGAUGGCAUCCUGCCUGCCCCAGGCACCAA ..((.((((((....((((......((........)).((.(((((.((...........)).))))).)).....)))).(((((..(((.....)))))))))))))).)). ( -40.20) >DroVir_CAF1 17825 111 - 1 GCUGGUGCCAAGCGUGAACAGCACG---CAGACGGUGACCAACAGUGUGAACAUUGAUAAGGAGCUGCAGGACAUUGCGUUGAGCGAUGGCAUAUUGCCCGCACCGGGCACCAA ..(((((((..(((((.....))))---)...(((((.....(((((....)))))....((.((.......((((((.....)))))).......)))).)))))))))))). ( -48.64) >DroPse_CAF1 16040 111 - 1 GGUGCUUCCGAGCUCCGCCAUCACA---CAGACCCUGACUAGUGGCACUACCAUCGACAAGGAGCUGCAGGACAUCGCCCUGAGCGAUGGCAUUUUGCCGGCCCCUGGCACAAA ((.(((....))).))((((((...---.....(((.....((((.....)))).....))).(((.((((.......)))))))))))))....((((((...)))))).... ( -39.60) >DroYak_CAF1 17387 114 - 1 GCUGCUGCCCGCCACGAGCAGCACCAAUCAGACGUUGACCAGCGGCACCACAAUCGACAAGGAGCUGCAGGACAUCGCCCUGAGCGAUGGCAUCCUGCCCGCCCCUGGCACCAA (.((((((.((...)).)))))).)........(.((.((((.(((.((...........))....((((((((((((.....))))))...))))))..))).)))))).).. ( -40.80) >DroAna_CAF1 16214 111 - 1 GCUGCUGCCGGGAACCACCAGCACC---CAGACGGUGACCAGCGGCACCACCAUCGACAAGGAGCUGCAGGACAUCGCCCUGAGCGAUGGCAUCCUGCCUGCCCCCGGCACUAA .....(((((((.......(((...---.....((((.((...)))))).((........)).)))((((((((((((.....))))))...)))))).....))))))).... ( -42.80) >DroPer_CAF1 16068 111 - 1 GGUGCUGCCGAGCUCCGGCAUCACA---CAGACCCUGACUAGUGGCACUACCAUCGACAAGGAGCUGCAGGACAUCGCCCUGAGCGAUGGCAUUUUGCCGGCCCCUGGCACAAA ..((.(((((.(..((((((((...---(((..(((.....((((.....)))).....)))..)))...))((((((.....))))))......))))))..).))))))).. ( -39.00) >consensus GCUGCUGCCGAGCACCAGCAGCACA___CAGACGCUGACCAGCGGCACCACCAUCGACAAGGAGCUGCAGGACAUCGCCCUGAGCGAUGGCAUCCUGCCCGCCCCUGGCACCAA ((((..............))))................((.(((((.((...........)).))))).)).((((((.....))))))......((((((...)))))).... (-27.56 = -26.34 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:56 2006