Locus 2805

Sequence ID 2R_DroMel_CAF1
Location 9,766,120 – 9,766,211
Length 91
Max. P 0.771817
window4640

overview

Window 0

Location 9,766,120 – 9,766,211
Length 91
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 73.05
Mean single sequence MFE -19.82
Consensus MFE -8.52
Energy contribution -9.83
Covariance contribution 1.31
Combinations/Pair 1.24
Mean z-score -1.96
Structure conservation index 0.43
SVM decision value 0.53
SVM RNA-class probability 0.771817
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9766120 91 + 20766785
CGGAAUUUUGUUUGGAGAUGUAUUCAAGUAAGUGACGAAAU-AGCACACUUAACUUGAAAGA---UUUCCUAAC---ACCUCAUCUCUCCCCAUUUAU
.((.....((((.((((((.(.((((((((((((.(.....-.)..))))).)))))))).)---))))).)))---))).................. ( -20.70)
>DroSec_CAF1 4211 84 + 1
CGGAAUUCAGUUUGGAGAUGUGUUCAAGUAAGUGACGAAAU-AACACACUUAACUUGAAAGA---UUUCCUAAC---A-------UCUUCCCCUCUCU
.((((....(((.((((((.(.((((((((((((.......-....))))).)))))))).)---))))).)))---.-------..))))....... ( -22.40)
>DroSim_CAF1 5303 84 + 1
CGGAAUUCAGUUUGGAGAUGUGUUCAAGUAAGUGACGAAAU-AACACACUUAACUUGAAAGA---UUUCCUAAC---A-------UCUUCCCCUCUCU
.((((....(((.((((((.(.((((((((((((.......-....))))).)))))))).)---))))).)))---.-------..))))....... ( -22.40)
>DroEre_CAF1 5172 83 + 1
CAAAAUCAUCUUUGGAGAUGUGUUCAAGUAAGUUACGAGAUCAUCACACUUGACUUAGAAGA---UUUGCUAAC---A-------CCCUC--CUCUCU
.............((((..(((((..((((((((..(((.(((.......))))))....))---)))))))))---)-------).)))--)..... ( -17.30)
>DroYak_CAF1 5290 83 + 1
UGGAAUCGAGUUUGGAGAUGUGUUCAAGUAAGUGAUGAGACCAAAACACUUUACUAGAAAAA---UAUCCUAAC---A-------CCUUG--CUCUCU
.......((((..((.(((((.(((.((((((((.(........).))).))))).)))..)---)))).....---.-------))..)--)))... ( -15.50)
>DroPer_CAF1 4236 90 + 1
GGGCAUCAUGUUCGGAGAUGUCUUCAAGUAAGUGCCCAAAU-AGAGUGCAGAACAAGAGAGGACCAGUCCUAAAGUUA-------CCUUCCCUUCCCU
(((..((.(((((((((....))))......(..(.(....-.).)..).))))).)).((((....)))).......-------....)))...... ( -20.60)
>consensus
CGGAAUCAAGUUUGGAGAUGUGUUCAAGUAAGUGACGAAAU_AACACACUUAACUUGAAAGA___UUUCCUAAC___A_______CCUUCCCCUCUCU
.............(((((....((((((((((((............))))).)))))))......)))))............................ ( -8.52 =  -9.83 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:53 2006