| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,761,738 – 9,761,837 |
| Length | 99 |
| Max. P | 0.918878 |
| Location | 9,761,738 – 9,761,837 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 86.03 |
| Mean single sequence MFE | -27.67 |
| Consensus MFE | -21.31 |
| Energy contribution | -21.75 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918878 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9761738 99 - 20766785 AGACUAAAACCGACUAUUAUAAUAUGGCAGCAGUUGGGGGUUUAUAUUUGAAUGUCCAACGGGCCAGAGUGAAGCCUUAUCAACUGAUAAUGCUCGUUU ..........(((...((((....((((....((((((.(((((....))))).))))))..))))..)))).((.(((((....))))).)))))... ( -26.30) >DroSim_CAF1 885 99 - 1 AGACUAAAACCGACUAUUAGAAUAUGGCAGCAGUUGGGGGUUUAUAUUUGAAUGCCCAGCGGGCCAGAGCGAAGCCUUAUCAACUGAUAAUGCUCGUUU ........................((((....((((((.(((((....))))).))))))..))))((((((.((.(((((....))))).)))))))) ( -33.00) >DroEre_CAF1 792 86 - 1 AGACUAAAACCGACUAUUAGAAUGUGGCACCAGGUGGGG-UUUUUAU-UAAAUGUCCACCGGG-----------CCUUAUCAAUUGAUAAUGCUCGCUU .........................(((....(((((((-(((....-.)))).))))))(((-----------(.(((((....))))).))))))). ( -21.90) >DroYak_CAF1 818 99 - 1 AGACUAAAACCGACUAUUAGAAUUUGGCAGCAGGUGGGGGUUUAUAUUUGAAUGUCCACCGGGCCAAAAUGAAGCCUUAUCAACUGAUAAUGUUCGUUU ......((((.(((((((((..((((((....((((((.(((((....))))).))))))..)))))).(((.......))).))))))..))).)))) ( -29.50) >consensus AGACUAAAACCGACUAUUAGAAUAUGGCAGCAGGUGGGGGUUUAUAUUUGAAUGUCCACCGGGCCAGAGUGAAGCCUUAUCAACUGAUAAUGCUCGUUU ..........(((...........((((....((((((.(((((....))))).))))))..)))).......((.(((((....))))).)))))... (-21.31 = -21.75 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:52 2006