Locus 2802

Sequence ID 2R_DroMel_CAF1
Location 9,754,427 – 9,754,525
Length 98
Max. P 0.668726
window4636

overview

Window 6

Location 9,754,427 – 9,754,525
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 94.67
Mean single sequence MFE -17.74
Consensus MFE -15.10
Energy contribution -14.86
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -1.36
Structure conservation index 0.85
SVM decision value 0.29
SVM RNA-class probability 0.668726
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9754427 98 - 20766785
GG-AAAAAAAAACGCAGAAAAUAGUCGAAAAUGUGUAUACAAAAAGUGUAACUAAGCGUUUUCAUGAGUGAUAAGGGCCAAGAGUUUACUGCUAGACGU
..-..........((((.((((..((((((((((.(((((.....))))).....)))))))).((.((.......)))).)))))).))))....... ( -17.20)
>DroSec_CAF1 3505 96 - 1
GG-GA--AAAAACGCAGAAAAUAGUCGAAAAUGUGUAUACAAAAAGUGUAACUAAGCGUUUUCAUGAGUGAUAAGGGCCAAGAGAUAACUGCUAGACGU
..-..--......((((.........((((((((.(((((.....))))).....)))))))).((.((.......))))........))))....... ( -16.20)
>DroSim_CAF1 3498 95 - 1
G--GA--AAAAACGCAGAAAAUAGUCGAAAAUGUGUAUACAAAAAGUGUAACUAAGCGUUUUCAUGAGUGAUAAGGGCCAAGAGUUAACUGCUAGACGU
.--..--......((((.........((((((((.(((((.....))))).....)))))))).((.((.......))))........))))....... ( -16.20)
>DroEre_CAF1 3482 97 - 1
GGGGA--AAAAACGCAGAAAAUAGUUGAAAAUGUGUAUACAAAAAGUGUAACUAAGCGUUUUCAUGAGUGAUAAGGGUCAAGAGUUUAUUGCGAGACGU
.....--.....(((((.((((...(((((((((.(((((.....))))).....)))))))))....((((....))))...)))).)))))...... ( -20.30)
>DroYak_CAF1 3479 97 - 1
GGGGA--AAAAACGCAGAAAAUAGUCGAAAAUGUGUAUACAAAAAGUGUAACUAAGCGUUUUCAUGAGUGAUAAGGGCCAAGAGUUUAUUGCGAGACGU
.....--................(((((((((((.(((((.....))))).....))))))))....(..(((((..(...)..)))))..)..))).. ( -18.80)
>consensus
GG_GA__AAAAACGCAGAAAAUAGUCGAAAAUGUGUAUACAAAAAGUGUAACUAAGCGUUUUCAUGAGUGAUAAGGGCCAAGAGUUUACUGCUAGACGU
.............((((.........((((((((.(((((.....))))).....)))))))).....((........))........))))....... (-15.10 = -14.86 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:50 2006