| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,748,990 – 9,749,104 |
| Length | 114 |
| Max. P | 0.837015 |
| Location | 9,748,990 – 9,749,104 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.04 |
| Mean single sequence MFE | -28.03 |
| Consensus MFE | -16.53 |
| Energy contribution | -16.62 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9748990 114 - 20766785 G-AUAUACUAUAUCUAAUCCUUCUGUGAUUCCGCAGAGAAACUCCAGAGCCAGGUGGAGACGCUGCAGACGGAGAUCAUGAACGUCCAGAUUAAGUACCAAAAGGAGCUGGAGAA (-((((...)))))......(((((((....)))))))...((((((..((.((((....))))...((((...........)))).................))..)))))).. ( -33.90) >DroVir_CAF1 7052 109 - 1 -----UAUU-UAUUUUACCCAUUGUUUAUUUUUCAGAGAAACUGCAGAGCCAAGUGGAAACGCUUCAGACUGAAAUUAUGAAUGUGCAGAUCAAAUAUCAAAAGGAGCUCGAGAA -----....-...................(((((.(((...(((((.(..((.(((....)))(((.....)))....))..).)))))........((.....)).)))))))) ( -17.70) >DroEre_CAF1 6601 114 - 1 A-GAAUAUUAUACAUAAUUCUUCUGUGAUCUCGCAGAGAAACUCCAGAGCCAGGUGGAGACGCUACAGACGGAGAUCAUGAACGUCCAGAUUAAGUACCAAAAGGAGCUGGAGAA .-...............((((.(((((....))))))))).((((((..((.((((....))))...((((...........)))).................))..)))))).. ( -34.80) >DroWil_CAF1 6724 104 - 1 UU--AAAUUAUGUA-AAUUCUU--------CUCCAGAUAAGCUUCAGAGUCAGGUGGAGACACUGCAGACGGAGAUUAUGAAUGUCCAGAUCAAGUAUCAAAAGGAGCUGGAGAA ..--..........-......(--------(((((.....(((((...(((.((((....))))...)))(((.((.....)).)))................))))))))))). ( -28.20) >DroYak_CAF1 6727 114 - 1 U-GAAUAUUUUAUCUAAUCCCUCUGUGAUCUCGCAGAGAAACUCCAAAGCCAAGUGGAGACGCUGCAGACGGAGAUCAUGAACGUCCAGAUUAAGUACCAAAAGGAGCUGGAGAA .-..................(((((((....)))))))...((((...((..((((....)))))).((((...........)))).......(((.((....)).))))))).. ( -31.40) >DroMoj_CAF1 7213 113 - 1 U-UUGUAUU-UAUUUGGUCAUUUGUUUAUAUUACAGAAAAACUGCAAAGUCAAGUGGAAACGCUGCAAACUGAGAUCAUGAAUGUACAGAUCAAAUAUCAAAAAGAGCUGGAGAA (-(((....-(((((((((...((((((((((.(((....(((....)))..((((....)))).....))).))).)))))))....))))))))).))))............. ( -22.20) >consensus U___AUAUUAUAUAUAAUCCUUCUGUGAUCUCGCAGAGAAACUCCAGAGCCAAGUGGAGACGCUGCAGACGGAGAUCAUGAACGUCCAGAUCAAGUACCAAAAGGAGCUGGAGAA .........................................((((((..((.((((....)))).........((((.((......))))))...........))..)))))).. (-16.53 = -16.62 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:47 2006