| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,744,451 – 9,744,550 |
| Length | 99 |
| Max. P | 0.585220 |
| Location | 9,744,451 – 9,744,550 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 74.71 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -10.13 |
| Energy contribution | -10.29 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9744451 99 - 20766785 UGAUUGUCAAUUAAUGUUGC--CAA-UACCGAAA----------GGUGCUAUC-GAAGAUAGUUGUGGCUGCGAUGACUGCGAGGUGUUCAGGCUGUCU-GGCAUG----UCUUCAUU ...............((.((--((.-.(((....----------)))((((((-...))))))..)))).))((.((((((.((..(.......)..))-.))).)----)).))... ( -28.20) >DroGri_CAF1 2356 114 - 1 CGAUUGGCAAUUAGUUUUGAAUUAACCACUUAAUGGGACACAGUGUCGUUAUCAGAAGACAUUUGCGACACUU-UGUC---GAAAUUUCCAGUUUGUCGAAUUGGUUGAUUCUGCUUU ............(((...((((((((((((....))((((.((((((((..((....)).....)))))))).-))))---.....................)))))))))).))).. ( -28.80) >DroSim_CAF1 2179 96 - 1 UGAUUGGCAAUUAAUGUUGC--CAA-UACCGAAA----------GGUGCUAUC-GGAGAUAGUUGUGGCUGCGAUGAC---AAGGUGUUCAGGCUGUCU-GGCAUG----UCUUCAUU ..(((((((((....)))))--)))-)(((....----------)))......-(((((((((((.(((.((..(((.---.......))).)).))))-))).))----)))))... ( -32.00) >DroEre_CAF1 2144 96 - 1 UGAUUGGCAAUUAAUGUUGC--CAA-UACCGAAA----------GGUGCUAUC-GGAGAUAGUUGUGGCUGCGAUGAC---AAGGUGUUCAGGCUGUCU-GGCAUG----UCUUCUCC ..(((((((((....)))))--)))-)(((....----------)))......-(((((((((((.(((.((..(((.---.......))).)).))))-))).))----)))))... ( -31.50) >DroYak_CAF1 2154 96 - 1 UGAUUGGCAAUUAAUGUUGC--CAA-UACCGAAA----------GGUGCUAUC-GGAGAUAGUUGUGGCUGCGAUGAC---AAGGUGUUCAGGCUGUCU-GGCAUG----UCUACUUU ..(((((((((....)))))--)))-)(((....----------)))((((((-...)))))).((((((((.(.(((---(.(.(.....).))))))-.))).)----.))))... ( -30.40) >consensus UGAUUGGCAAUUAAUGUUGC__CAA_UACCGAAA__________GGUGCUAUC_GGAGAUAGUUGUGGCUGCGAUGAC___AAGGUGUUCAGGCUGUCU_GGCAUG____UCUUCUUU ......(((((....))))).........................(((((......((((((((..(((.................)))..)))))))).)))))............. (-10.13 = -10.29 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:43 2006