| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,740,746 – 9,740,844 |
| Length | 98 |
| Max. P | 0.796473 |
| Location | 9,740,746 – 9,740,844 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 74.01 |
| Mean single sequence MFE | -34.63 |
| Consensus MFE | -16.03 |
| Energy contribution | -16.92 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.796473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9740746 98 + 20766785 UGGAUUCAC---UACGGUUGCUAGGUACGAAAACCCCGUAUCUGGUGGCCAUAAGCAGCUCACU-AUACGGAUAC-GGUUAAGCCGUUGCCGGGCUGC------AAAAA .........---...(((..(((((((((.......)))))))))..)))....((((((....-...(((..((-((.....))))..)))))))))------..... ( -39.71) >DroSec_CAF1 9653 99 + 1 UGGAUUCAC---UACGGUUGCUAGGUACGAAAGCCCCGUAUCUGGUGGCCAUAAGCAGUGUGGUGCUACGGAUAC-GAUUAAGCCGUUGCCGGGCUGC------GAAAA ....(((..---...(((..(((((((((.......)))))))))..)))....(((((.((((...((((....-.......)))).)))).)))))------))).. ( -41.40) >DroSim_CAF1 9741 102 + 1 UGGAUUCACUACUACGGUUGCUAGGUACGAAAGCCCCGUAUCUGGUGGCCAUAAGCAGUGAGGUGCUACGGAUAC-GGUUAAGCCGUUGCCGGGCUGC------GAAAA ....((((((.((..(((..(((((((((.......)))))))))..)))...)).))))))(((((.(((..((-((.....))))..)))))).))------..... ( -40.80) >DroEre_CAF1 9474 91 + 1 UGGAGGCAC---CACGGUUGCUAGGUACGAAA-CCCCGUAUCUGGGGGCCAUAAGCAGUUCACU-------AUGC-GGUUAAACCGUCGCCGGGCCGC------GAAAA ....(((((---(..((((.(((((((((...-...))))))))).))))....(((.......-------.)))-)))....(((....))))))..------..... ( -33.70) >DroYak_CAF1 9613 97 + 1 UGGAGGUAC---UACGGUUGCUAGGUACUAAA-CCCCGUAUAUGGGGGCCAUAAGCAGUUCGCU-------AUAC-GGUUAAGCCGUUGCCGGGCCGCCGACGUAAAAA ......(((---..((((.(((.((((.....-(((((....)))))......(((.....)))-------..((-((.....)))))))).))).))))..))).... ( -29.50) >DroAna_CAF1 8416 78 + 1 UA-----------GCCGUUGCCAGGCGCGAAU---CCCUAUCGGAGGGCCAUAAGCCAUUUACU-------GUCCGGGUUAAGCCGUAGCCGG----U------GCAAA ..-----------((((((((..(((...(((---((....(((..(((.....))).....))-------)...)))))..))))))).)))----)------..... ( -22.70) >consensus UGGAUUCAC___UACGGUUGCUAGGUACGAAA_CCCCGUAUCUGGGGGCCAUAAGCAGUUCACU_______AUAC_GGUUAAGCCGUUGCCGGGCUGC______GAAAA ...............(((..(((((((((.......)))))))))..))).................................(((....)))................ (-16.03 = -16.92 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:42 2006