Locus 2793

Sequence ID 2R_DroMel_CAF1
Location 9,735,321 – 9,735,421
Length 100
Max. P 0.953310
window4623

overview

Window 3

Location 9,735,321 – 9,735,421
Length 100
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 85.69
Mean single sequence MFE -27.94
Consensus MFE -19.05
Energy contribution -20.05
Covariance contribution 1.00
Combinations/Pair 1.05
Mean z-score -2.87
Structure conservation index 0.68
SVM decision value 1.43
SVM RNA-class probability 0.953310
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9735321 100 - 20766785
UUCGGUUAUCGUUUGUUUUCGUAUGAGAAAAGCGAAAGCAAUCGAACGCGUAC-GCC-GACACAGUAAAAGCGAAAGUUAAAAAGUCAACGGCGAUGGCAAG
....((((((((((((((((......)))))((....))...)))))......-(((-(..........(((....)))..........))))))))))... ( -27.65)
>DroSec_CAF1 4254 101 - 1
UUCGGUUUUCGGUUGUUUUCGUGUGAGAAAAGCGAAAGCAAUCGAACGCGUAC-GCCGGACACAGUAAAAGCGAAAGUUAAAAAGUCAACUGCGAUGGCAAG
....((.(((((((((((((((.........))))))))))))))).))....-((((..(.((((...(((....))).........)))).).))))... ( -31.40)
>DroEre_CAF1 4090 86 - 1
----GUUU----------UCGUGUGAGAAAAGCGAAAGCAAUCGAACGCGUAC-GCC-GACACAGUAAAAGCGAAAGUUAAAAAGUCAACGACAAAGGCAAC
----((..----------.(((((..((...((....))..))..))))).))-(((-...........(((....))).....(((...)))...)))... ( -22.80)
>DroYak_CAF1 4018 96 - 1
----GUUUUCG-UGGUUUUCGUGUGAGAAAAGCGAAAGCAAUCGAACGCGUAUUGCC-GACACAGUAAAAGCGAAAGUUAAAAAGUCAGCGACGAAGGCAAC
----(((((((-((((...(((((..((...((....))..))..)))))....)))-(((........(((....))).....)))....))))))))... ( -29.92)
>consensus
____GUUUUCG_UUGUUUUCGUGUGAGAAAAGCGAAAGCAAUCGAACGCGUAC_GCC_GACACAGUAAAAGCGAAAGUUAAAAAGUCAACGACGAAGGCAAC
....(((((((........(((((..((...((....))..))..)))))........(((........(((....))).....))).....)))))))... (-19.05 = -20.05 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:37 2006