Locus 2792

Sequence ID 2R_DroMel_CAF1
Location 9,734,412 – 9,734,515
Length 103
Max. P 0.632507
window4622

overview

Window 2

Location 9,734,412 – 9,734,515
Length 103
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 73.89
Mean single sequence MFE -35.06
Consensus MFE -21.43
Energy contribution -23.03
Covariance contribution 1.60
Combinations/Pair 1.19
Mean z-score -1.54
Structure conservation index 0.61
SVM decision value 0.20
SVM RNA-class probability 0.632507
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9734412 103 + 20766785
UUGACAGAGAGUUGCGAACGAUGCCG-GCUGCUCUUGCU---GCUUUCAUCGCUCCA-AAUGCAUCCGUCG-CUACUCCAUAGUGUGGAAUUGGGGGUCUCGGAAACUA
......((((........(((((..(-((.((....)).---)))..)))))(((((-(.....((((.((-(((.....))))))))).)))))).))))(....).. ( -31.50)
>DroSec_CAF1 3371 104 + 1
UCAACUGAGAGUUGCUAUCGAUGCCG-GCAGCUCUCGCU---GCUUUCAUUGCUCCA-ACUGCAUCCGUCGACGACUCCGUAGUGUGGAGUUGGGGGUCUCAGAAGCCA
....((((((........(((((..(-(((((....)))---)))..)))))(((((-(((.((..(....(((....))).)..)).)))))))).))))))...... ( -40.00)
>DroSim_CAF1 3460 104 + 1
UCAACUGAGAGUUGCUAUCGAUGCCG-GCAGCUCUCGUU---GCUUUCAUUGCUCCA-ACUGCAUCCGUCGACCAUUCCGUAGUGUGGAGUUGGGGGUCUCAGACACCA
....((((((........(((((..(-(((((....)))---)))..)))))(((((-(((.((..(..((.......))..)..)).)))))))).))))))...... ( -36.00)
>DroEre_CAF1 3266 97 + 1
UUGAAUGAGAGCUGCGAUCGAUGCCG-GCAGCUCUCCUCUCAGCUUUCAGCGCUCCA-ACUGCAUGCGAAG-CUACUCCACAGU--GGAGCUGGGA-------GCUCCC
.(((..(((((((((...((....))-)))))))))...)))(((..((((..((((-.(((..((.((..-....))))))))--)))))))..)-------)).... ( -38.00)
>DroYak_CAF1 3156 99 + 1
UUGAAUGAGAGCUGCGAUCGAUGCCGGGCAGCUCUCGCUUCAUCUUUCAGCUCUCGAAACCGCAUCUGUAG-CUACUCCACAGU--GGAGUUCCCA-------ACUCCG
.((((((((((((((..(((....))))))))))))).))))......((((...((.......))...))-))..........--(((((.....-------))))). ( -29.80)
>consensus
UUGACUGAGAGUUGCGAUCGAUGCCG_GCAGCUCUCGCU___GCUUUCAUCGCUCCA_ACUGCAUCCGUCG_CUACUCCAUAGUGUGGAGUUGGGGGUCUC_GACACCA
......(((((((((...((....)).)))))))))......(((..((..((((((.((((..................)))).))))))))..)))........... (-21.43 = -23.03 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:36 2006