Locus 2791

Sequence ID 2R_DroMel_CAF1
Location 9,734,290 – 9,734,390
Length 100
Max. P 0.861811
window4621

overview

Window 1

Location 9,734,290 – 9,734,390
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 82.65
Mean single sequence MFE -14.66
Consensus MFE -14.40
Energy contribution -14.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.14
Structure conservation index 0.98
SVM decision value 0.83
SVM RNA-class probability 0.861811
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9734290 100 + 20766785
ACGGAGGCAAAGUCAACAGUCACAUCCAUACCAAAUAGCACCUUCAUCAUCAUCAUCAUCACAACACCAGCAACUAGUGGCUGCGCGGCAUUGCGUAUAC
......((((.(((..(((((((.....................................................)))))))...))).))))...... ( -14.40)
>DroSec_CAF1 3273 76 + 1
ACGGAGGCAAAGUCAACAGUCACAUC------------------CA------UCAUCAUCACAACACCAGCAACUAGUGGCUGCUCGGCAUUGCGUAUAC
......((((.(((..(((((((...------------------..------........................)))))))...))).))))...... ( -15.05)
>DroSim_CAF1 3344 94 + 1
ACGGAGGCAAAGUCAACAGUCACAUCCAUACCAAAUAGCACCUCCA------UCAUCAUCACAACACCAGCAACUAGUGGCUGCUCGGCAUUGCGUAUAC
......((((.(((..(((((((.......................------........................)))))))...))).))))...... ( -14.53)
>consensus
ACGGAGGCAAAGUCAACAGUCACAUCCAUACCAAAUAGCACCU_CA______UCAUCAUCACAACACCAGCAACUAGUGGCUGCUCGGCAUUGCGUAUAC
......((((.(((..(((((((.....................................................)))))))...))).))))...... (-14.40 = -14.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:35 2006