Locus 279

Sequence ID 2R_DroMel_CAF1
Location 1,681,174 – 1,681,294
Length 120
Max. P 0.712399
window590

overview

Window 0

Location 1,681,174 – 1,681,294
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.25
Mean single sequence MFE -43.46
Consensus MFE -28.01
Energy contribution -29.33
Covariance contribution 1.32
Combinations/Pair 1.27
Mean z-score -1.71
Structure conservation index 0.64
SVM decision value 0.38
SVM RNA-class probability 0.712399
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1681174 120 - 20766785
CCAGGCGCUUCGUGGAAUUUUUGAAUCUGCUCGAAGAACGGCACUUUUGCGGUCAAAAACUCCCGGGUGCAGCCUACAACGGGAAACGGACGGAUGUAUUUUACUCCAUGGCGUUCCCAA
..((((((((((.(((.(((((((..((((..((((.......)))).))))))))))).))))))).)).)))).....(((((.((...(((.(((...))))))....))))))).. ( -37.50)
>DroPse_CAF1 96792 120 - 1
CCGGGAGCCUCGUGGAACUUCCUGAUCUGGUCGAAGAACGGCAACCGUCCGGUAAGGAACCCCACCGUAUCACCCAAUAUGGGCAGUGGCCCUAUUUCCUUCACCCCAUGGCGCUUCCAA
..((((((.((((((..(.....)....(((.((((.((((......(((.....)))......)))).......((((.((((....))))))))..))))))))))))).)))))).. ( -39.50)
>DroSec_CAF1 66665 120 - 1
CCAGGCGCUUCGUGGAAUUUUUGGAUCUGCUCGAAGAACGGCACUCUUGCGGUCAAGAACUCGCGGGUGCAGCCUAGAAUGGGCAACGGGCGGAUGUAUUUCACUCCAUGGCGUGCCCAA
...(((((.(((((((.....((.(((((((((.......((((((..(((((.....)).))))))))).((((.....))))..))))))))).))......))))))).)))))... ( -51.50)
>DroSim_CAF1 63766 120 - 1
CCAGGCGCUUCGUGGAAUUUUUGGAUCUGCUCGAAGAAGGGCACUCUUGCGGUCAAGAACUCGCGGGUGCAGCCUAAAAUGGGCAACGGGCGGAUGUAUUUCACUCCAUGGCGGGCCCAA
...(((.(.(((((((.....((.(((((((((.......((((((..(((((.....)).))))))))).((((.....))))..))))))))).))......))))))).).)))... ( -49.30)
>DroPer_CAF1 90746 120 - 1
CCGGGAGCCUCGUGGAACUUCCUGAUCUGGUCGAAGAACGGCAACCGUCCGGUAAGGAACCCCACCGUAUCACCCAAUAUGGGCAGUGGCCCUAUUUCCUUCACCCCAUGGCGCUUCCAA
..((((((.((((((..(.....)....(((.((((.((((......(((.....)))......)))).......((((.((((....))))))))..))))))))))))).)))))).. ( -39.50)
>consensus
CCAGGCGCUUCGUGGAAUUUUUGGAUCUGCUCGAAGAACGGCACUCUUGCGGUCAAGAACUCCCGGGUGCAGCCUAAAAUGGGCAACGGCCGGAUGUAUUUCACUCCAUGGCGCUCCCAA
...(((((.(((((((........(((((((((.......((((((....(((.....)))...))))))..(((.....)))...))))))))).........))))))).)))))... (-28.01 = -29.33 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:25 2006