| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,729,367 – 9,729,458 |
| Length | 91 |
| Max. P | 0.851355 |
| Location | 9,729,367 – 9,729,458 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 77.79 |
| Mean single sequence MFE | -37.23 |
| Consensus MFE | -15.32 |
| Energy contribution | -16.60 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.851355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9729367 91 - 20766785 --CUGCACCUCCUACCUGGCGGU-------GCACAGCGAGAAAUCGGAGCACUUCGA-----AU--CGGGCUCGAUUUGGAGUGGAGCUGUCUGAUUUCUUGCAGUG --.((((((.((.....)).)))-------)))..(((((((((((((.((((((((-----((--((....))))))))))))......))))))))))))).... ( -45.50) >DroSec_CAF1 47490 91 - 1 --CUGCACCUCCUACCUGGCGGU-------GCACAGCGAGAAAUCGGAGCACUUCGA-----AU--CGCGCUCGAUGUGGAGUGGGGCUGGCUGAUUUCUUGCAGUG --.((((((.((.....)).)))-------)))..(((((((((((((((((((((.-----((--((....)))).))))))...)))..)))))))))))).... ( -40.30) >DroSim_CAF1 38799 91 - 1 --CUGCACCUCCUACCUGGCGGU-------GCACAGCGAGAAAUCGGAGCACUUCGU-----AU--CGCGCUCGAUGUGCAGUGGGGCUGGCUGAUUUCUUCCAGUG --.((((((.((.....)).)))-------)))..(.((((((((((..(((((((.-----..--.((((.....))))..))))).)).)))))))))).).... ( -33.50) >DroEre_CAF1 40292 91 - 1 --CUGCACCUCCUACUUGGCGGU-------GCACAGCGAGAAAUCGGAGCAUUUCGA-----AG--CGAUCUCGAUGUCGAGGGCGGUUGGCCGAUUUCUUACAGUG --.((((((.((.....)).)))-------)))..(..(((((((((.((.((((((-----..--((....))...))))))))......)))))))))..).... ( -36.80) >DroYak_CAF1 46543 91 - 1 --CUGCACCUCCUACCUGGCGGU-------GCACAGCGAGAAAUCGGAGCAUUUCGA-----AA--CGCUCUCGAUGUCCAGGACGGCUGGCAGAUUUCUUGCAGUG --.((((((.((.....)).)))-------)))..(((((((((((((((.......-----..--.)))))...((.((((.....)))))))))))))))).... ( -38.50) >DroAna_CAF1 44327 107 - 1 AACUGCACCUCCUACCUGGAGGUUGCCCCUUCACUGAACGAAAUCCAGGCAAGUCGUUGGAAAGCACAACCUAAAUUUGAAAAUCUUGAAGCAGAUUUCUUGCAGUG ....((((((((.....))))).))).....(((((...((((((...((..((.(((....)))))........((..(.....)..)))).))))))...))))) ( -28.80) >consensus __CUGCACCUCCUACCUGGCGGU_______GCACAGCGAGAAAUCGGAGCACUUCGA_____AU__CGCGCUCGAUGUGGAGUGCGGCUGGCUGAUUUCUUGCAGUG ..(((((((.((.....)).)))..............((((((((((..(((.(((................))).)))............)))))))))))))).. (-15.32 = -16.60 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:30 2006