| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,721,114 – 9,721,205 |
| Length | 91 |
| Max. P | 0.999137 |
| Location | 9,721,114 – 9,721,205 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 76.70 |
| Mean single sequence MFE | -34.04 |
| Consensus MFE | -24.25 |
| Energy contribution | -25.01 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.71 |
| SVM decision value | 3.39 |
| SVM RNA-class probability | 0.999137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9721114 91 - 20766785 AGGGAGGAGUUGCCUACUUUUGUGGCAGCCACGAGGGGAGUCUCCCCUACCAC---CCCUCACAGACCGGCUCAGUCACCUCC----AACUACCAACA ..(((((.((((((.((....))))))))...((((((..............)---)))))...(((.......))).)))))----........... ( -31.44) >DroSec_CAF1 38888 94 - 1 AGGGAGGAGUUGCCUACUUUUGUGGCAGCCUCGAGGGGAGUCUACCCUCCCGCUCCCCCUCUCAGUCCGGCUCAGUCAGCUCC----AACUACCAGCA .((((((.((((((.((....))))))))...((((((((......))))).)))..))))))(((..((((.....))))..----.)))....... ( -34.90) >DroSim_CAF1 30198 84 - 1 AGGGAGGAGUUGCCUACUUUUGUGGCAGCCUCGAGGGGAGUCCACCCUCCUACUCCCCCUCUCA----------GUCAGCUCC----AACUACCAGCA .(((((((((((((.((....))))))).)))..(((((((..........)))))))))))).----------....(((..----.......))). ( -30.40) >DroYak_CAF1 37677 88 - 1 AGGGAGGAGUUGCCUACUUUUGUGGCAGCCUCGAGGGGGGACAC----------CCCCCUCUUAGCCCAGCUCAGUCACCUCCCCGCAAUCGCCAACU .((((((.((((((.((....))))))))...((((((((...)----------))))))).................)))))).((....))..... ( -39.40) >consensus AGGGAGGAGUUGCCUACUUUUGUGGCAGCCUCGAGGGGAGUCUACCCUCCCAC_CCCCCUCUCAG_CCGGCUCAGUCACCUCC____AACUACCAACA ..(((((.((((((.((....))))))))...((((((.................)))))).................)))))............... (-24.25 = -25.01 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:16 2006