Locus 2776

Sequence ID 2R_DroMel_CAF1
Location 9,697,624 – 9,697,714
Length 90
Max. P 0.500000
window4595

overview

Window 5

Location 9,697,624 – 9,697,714
Length 90
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 82.60
Mean single sequence MFE -17.78
Consensus MFE -10.37
Energy contribution -11.32
Covariance contribution 0.94
Combinations/Pair 1.11
Mean z-score -2.11
Structure conservation index 0.58
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9697624 90 - 20766785
AAAACCAAUUGAACGUAACGCUUU-AAAAC--UUGCAACUCAU-A-CAGGUUGUUGUUUUAGAUGCGACCAAGGCAUCGCAAA--AAU--UAACAGAUA
...................((..(-(((((--..((((((...-.-..)))))).))))))(((((.......)))))))...--...--......... ( -18.20)
>DroVir_CAF1 12346 90 - 1
A---------AAAUGUAAUUAGAUAAAAACUUUUGCAACUUAUGACGAGGUUCUUGUUUUAGAUGCGACCAAUGCAUCACAAAGAAAUUAUAACAGAAU
.---------...(((((((((((((.((((((..((.....))..)))))).))))))..((((((.....)))))).......)))))))....... ( -15.10)
>DroPse_CAF1 11373 88 - 1
UAAACC-AUCGAACGUAAUUCUUU-AAAAC--UCGCAACGCAA-U-CAGGUUGAUGUUUUAGAUGCGACCAACGCAUCGCAA---AAU--UAACAGAUA
......-(((.....(((((...(-(((((--...((((....-.-...))))..))))))((((((.....))))))....---)))--))...))). ( -17.90)
>DroYak_CAF1 11959 90 - 1
AAAACCAAUUGAACGUAACGCUUU-AAAAC--UUGCAACUCAU-A-CAGGUUGUUGUUUUAGAUGCGACCAAGGCAUCGCAAA--AAU--UAACAGAUA
...................((..(-(((((--..((((((...-.-..)))))).))))))(((((.......)))))))...--...--......... ( -18.20)
>DroAna_CAF1 13488 90 - 1
AAAACCAAUCGAACGUAACACUUU-AAAAC--UUGCAACUCAU-A-CAGGUUGUUGUUUUAGAUGCGACCAACGCAUCGCAAA--AAU--UAACAGAUA
.......(((.............(-(((((--..((((((...-.-..)))))).))))))((((((.....)))))).....--...--.....))). ( -19.40)
>DroPer_CAF1 11391 88 - 1
UAAACC-AUCGAACGUAAUUCUUU-AAAAC--UCGCAACGCAA-U-CAGGUUGAUGUUUUAGAUGCGACCAACGCAUCGCAA---AAU--UAACAGAUA
......-(((.....(((((...(-(((((--...((((....-.-...))))..))))))((((((.....))))))....---)))--))...))). ( -17.90)
>consensus
AAAACC_AUCGAACGUAACUCUUU_AAAAC__UUGCAACUCAU_A_CAGGUUGUUGUUUUAGAUGCGACCAACGCAUCGCAAA__AAU__UAACAGAUA
..............((.........(((((....((((((........)))))).))))).((((((.....))))))))................... (-10.37 = -11.32 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:11 2006