| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,695,749 – 9,695,852 |
| Length | 103 |
| Max. P | 0.817007 |
| Location | 9,695,749 – 9,695,852 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.46 |
| Mean single sequence MFE | -33.12 |
| Consensus MFE | -28.16 |
| Energy contribution | -28.18 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.817007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9695749 103 + 20766785 AGUGCGGCAAGGCCUUCUUCCAGAAGAACCACCUGAUGCUGCACCAGCGCCAGCAUCUGGAGACGAAGCCAGCCAUAUCGCAGCAACAGGUAUGCUAGAC---UCC-------------- (((..((((.((.((((.....))))..))(((((.((((((....((....))..((((........)))).......)))))).))))).))))..))---)..-------------- ( -35.00) >DroVir_CAF1 10005 104 + 1 AGUGUGGAAAGGCAUUCUUCCAAAAGAACCAUCUGAUGCUGCAUCAGCGCCAGCAUUUGGAAACAAAGCCAGCCAUAUCGCAGCAACAGGUAUGCUAAGU--GCCC-------------- ..........(((((((((....))))...(((((.((((((......((..((.((((....))))))..))......)))))).))))).......))--))).-------------- ( -31.60) >DroGri_CAF1 12413 106 + 1 AGUGUGGAAAGGCGUUCUUCCAAAAGAAUCAUCUGAUGCUGCAUCAGCGCCAGCAUUUGGAAACGAAGCCAGCCAUAUCGCAGCAACAGGUAUGCUAAGUGUGCCC-------------- ..........(((((((((....)))))).(((((.((((((......((..((.((((....))))))..))......)))))).)))))...........))).-------------- ( -31.30) >DroWil_CAF1 8444 100 + 1 AGUGUGGCAAGGCAUUCUUCCAGAAGAAUCAUCUGAUGCUGCAUCAGCGCCAGCAUUUGGAAACAAAGCCAGCCAUAUCCCAGCAACAGGUAUGCUAGC------U-------------- .(((((((..(((((((((....))))))...((((((...)))))).))).((.((((....))))))..)))))))...((((.......))))...------.-------------- ( -32.20) >DroMoj_CAF1 10084 104 + 1 AAUGUGGAAAGGCGUUCUUCCAAAAGAAUCAUCUGAUGCUGCAUCAGCGCCAGCAUUUGGAAACAAAGCCAGCCAUAUCGCAGCAACAGGUAUGCUAAGU--GCCC-------------- ..........(((((((((....)))))).(((((.((((((......((..((.((((....))))))..))......)))))).))))).........--))).-------------- ( -31.60) >DroAna_CAF1 11622 117 + 1 AGUGCGGCAAGGCCUUCUUCCAGAAGAACCACCUGAUGCUGCAUCAGCGCCAGCACUUGGAGACGAAGCCAGCCAUAUCGCAGCAACAGGUAUGCUAGAC---UCCAGAACCUGGUCAUA (((..((((.((.((((.....))))..))(((((.((((((......((..((..(((....))).))..))......)))))).))))).))))..))---)((((...))))..... ( -37.00) >consensus AGUGUGGAAAGGCAUUCUUCCAAAAGAACCAUCUGAUGCUGCAUCAGCGCCAGCAUUUGGAAACAAAGCCAGCCAUAUCGCAGCAACAGGUAUGCUAAGU___CCC______________ ..........(((.(((((....)))))..(((((.((((((......((..((.((((....))))))..))......)))))).)))))..)))........................ (-28.16 = -28.18 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:10 2006