Locus 2774

Sequence ID 2R_DroMel_CAF1
Location 9,693,029 – 9,693,134
Length 105
Max. P 0.999707
window4593

overview

Window 3

Location 9,693,029 – 9,693,134
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 95.81
Mean single sequence MFE -43.62
Consensus MFE -40.54
Energy contribution -41.26
Covariance contribution 0.72
Combinations/Pair 1.08
Mean z-score -2.42
Structure conservation index 0.93
SVM decision value 3.92
SVM RNA-class probability 0.999707
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9693029 105 - 20766785
CCCACCAGCGGCGGCUGCAGCUGCUGCGGCCGUGGCCGGAUCCACUAGCAGAUCUGUUUUUUCAAUUCGAUGGGUUGAUACGUUUCAUUUCGGUUGAAGGAAGGU
...(((.((.((((((((((...)))))))))).))((((((........))))))((((((((((.(((.....(((......)))..)))))))))))))))) ( -40.80)
>DroSec_CAF1 9455 105 - 1
CCCACCAGCAGCGGCUGCUGCUGCUGCGGCCGUGGCCGGAUCCACCAGCAGAUCUGUUGUUUCAAUUCGAUGGGUUGAUACGUUUCAUUUCGGUUGGAGGAAGGU
.((.((.((((((((....))))))))(((....))))).(((.(((((.((..((.(((.((((((.....)))))).)))...))..)).))))).))).)). ( -46.60)
>DroSim_CAF1 7608 105 - 1
CCCACCAGCAGCGGCUGCUGCUGCUGCGGCCGUGGCCGGAUCCACCAGCAGAUCUGUUGUUUCAAUUCGAUGGGUUGAUACGUUUCAUUUCGGUUGGAGGAAGGU
.((.((.((((((((....))))))))(((....))))).(((.(((((.((..((.(((.((((((.....)))))).)))...))..)).))))).))).)). ( -46.60)
>DroEre_CAF1 7432 104 - 1
CCCACCAGCAGCGGCUGCUGCUGCUGCGGCCGUGGCCGGAUCCACCAGCACAUCUGUUGUUUCAAUUCGAUGGGUUGGUACGUUUCAUUUUGGUUGGAG-UAGGU
((.((((((((((((....))))))))(((....)))(((...((((((.((((.((((...))))..)))).))))))....)))....)))).))..-..... ( -42.10)
>DroYak_CAF1 7444 104 - 1
CCCACCAGCAGCGGCUGCAGCUGCUGCGGCCGUGGCCGGAUCCACCAGCAGAUCUGUUGUUUCAAUUCGAUGGGUUGAUACGUUUCAUUUCGGUUGGAG-AAGGU
.((.((.((((((((....))))))))(((....))))).....(((((.((..((.(((.((((((.....)))))).)))...))..)).)))))..-..)). ( -42.00)
>consensus
CCCACCAGCAGCGGCUGCUGCUGCUGCGGCCGUGGCCGGAUCCACCAGCAGAUCUGUUGUUUCAAUUCGAUGGGUUGAUACGUUUCAUUUCGGUUGGAGGAAGGU
.((.((.((((((((....))))))))(((....))))).(((.(((((.((..((.(((.((((((.....)))))).)))...))..)).))))).))).)). (-40.54 = -41.26 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:09 2006