Locus 2767

Sequence ID 2R_DroMel_CAF1
Location 9,684,725 – 9,684,845
Length 120
Max. P 0.895725
window4583

overview

Window 3

Location 9,684,725 – 9,684,845
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.54
Mean single sequence MFE -33.75
Consensus MFE -29.48
Energy contribution -28.22
Covariance contribution -1.25
Combinations/Pair 1.14
Mean z-score -1.86
Structure conservation index 0.87
SVM decision value 0.99
SVM RNA-class probability 0.895725
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9684725 120 - 20766785
GUCUUGACCACAUCGAUGGGAUUGGUGAACACCACCGCACCCAUCGCUGCCGUUCCGCCCAGCACGAAAUCCGACUUGGUCAUGUUUUCACCCCAAACUUUGGAUUUGGUUGAUCUUACG
...(..(((.....((((((..(((((.....)))))..))))))((((..........))))...((((((((.((((...((....))..))))...)))))))))))..)....... ( -34.90)
>DroSim_CAF1 7250 119 - 1
GUCUUGACCACAUCGAUGGGAUUGGUGAACACCACCGCACCCAUCGCUGCCGUUCCGCCCAGCACGAAAUCCGACUUGGUCAUGUUUUCACCCCA-ACUUUGGAUUUGGAUGAUCUUACG
....((((((..((((((((..(((((.....)))))..))))))((((..........)))).........))..)))))).((..(((..(((-(........)))).)))....)). ( -34.30)
>DroEre_CAF1 7201 119 - 1
GUCUUGACCACAUCUAUGGGAUUGGUGAGCACCACCGCUCCCAUGGCUGCCACCCCGCCCAGCACAAAAUCAGACUUGGUCAUCCUUUCACCUCA-ACUUUGGAUAUAGUUGAUCUUACG
....((((((..(((((((((.(((((.....))))).)))))).((((..........))))........)))..))))))..........(((-(((........))))))....... ( -35.00)
>DroYak_CAF1 7131 119 - 1
GUCUUGACCACAUCGAUGGGAUUGGUGAGCACCACCGCAUUCAUCGCUGCCACCCCACCCAGCACAAAAUCAGACUUGGUCAUUCUUUCAACUCA-ACUUUGGAAAUAGUUGAUCUUACG
....((((((..((((((((..(((((.....)))))..))))))((((..........)))).........))..))))))..........(((-(((.(....).))))))....... ( -30.80)
>consensus
GUCUUGACCACAUCGAUGGGAUUGGUGAACACCACCGCACCCAUCGCUGCCACCCCGCCCAGCACAAAAUCAGACUUGGUCAUGCUUUCACCCCA_ACUUUGGAUAUAGUUGAUCUUACG
....((((((..((((((((..(((((.....)))))..))))))((((..........)))).........))..)))))).....(((.((....(....)....)).)))....... (-29.48 = -28.22 +  -1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:59 2006