| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,662,590 – 9,662,690 |
| Length | 100 |
| Max. P | 0.516539 |
| Location | 9,662,590 – 9,662,690 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 86.20 |
| Mean single sequence MFE | -20.30 |
| Consensus MFE | -19.34 |
| Energy contribution | -19.15 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.95 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9662590 100 + 20766785 AAAAAAAAAAAGCGAAACCAAA-GUUAAGGUAUGGGCCAAAUGCUCCCGGCAGGUGGUAAGCGAAGCGAGACUGCAACCGAAAUUGCAUUGCGAAUGCAAC ...........((((.(((...-.....))).(((((((..(((.....)))..)))).......(((....)))..)))...)))).((((....)))). ( -22.10) >DroSec_CAF1 61217 85 + 1 AAAAA---------------AG-UUUAAGGUAUGGGCCAAAUGCUCCCGGCAGGUGGUAAGCGAAGCGAGACUGCAACCGAAAUUGCAUUGCGAAUGCAAC .....---------------..-............((((..(((.....)))..))))..(((..((((...(((((......)))))))))...)))... ( -19.80) >DroEre_CAF1 61537 86 + 1 AAAAA---------------AAUUAAAAGGUAUGGGCCAAAUGCACCCGGCAGGUGGUAAGCGAAGCGAGACUGCAACCGAAAUUGCAUUGCAAAUGCAAC .....---------------.........((((..((..((((((..(((...(..((..((...))...))..)..)))....))))))))..))))... ( -20.30) >DroYak_CAF1 74503 84 + 1 AAAAA---------------A--UAAAAGUUAUGGGCCGAAUGCACCCGGCAGGUGGUAAGCGAAGCGAGACUGCAACCGAAAUUGCAUUGCGAAUGCAAC .....---------------.--.........(((((((........))))..(..((..((...))...))..)..)))...((((((.....)))))). ( -19.00) >consensus AAAAA_______________AA_UAAAAGGUAUGGGCCAAAUGCACCCGGCAGGUGGUAAGCGAAGCGAGACUGCAACCGAAAUUGCAUUGCGAAUGCAAC ...................................((((..(((.....)))..))))..(((..((((...(((((......)))))))))...)))... (-19.34 = -19.15 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:41 2006