Locus 2755

Sequence ID 2R_DroMel_CAF1
Location 9,662,116 – 9,662,207
Length 91
Max. P 0.713941
window4565

overview

Window 5

Location 9,662,116 – 9,662,207
Length 91
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 85.25
Mean single sequence MFE -14.48
Consensus MFE -9.30
Energy contribution -9.42
Covariance contribution 0.11
Combinations/Pair 1.08
Mean z-score -2.55
Structure conservation index 0.64
SVM decision value 0.38
SVM RNA-class probability 0.713941
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9662116 91 - 20766785
CUUUUUCCAUUCCAUUCCCUUUUUUUUUGGGGAA--AUUCAACAUCCUGGUAAAGGACACCGCAAAUCCUUCACACAAAUCCCCUGCACAAAU
..............((((((........))))))--...........((((.(((((.........))))).)).))................ ( -12.70)
>DroSec_CAF1 60718 93 - 1
CUUUUUCCAUUCCAUUCCCUUUUUUUUUGAGGGAAUAUUCAACAUCCUGGUAAAGGACACCGCAAAUUCUUCACACAAAUCCCCUGCACAAAU
.............((((((((.......))))))))........((((.....))))....(((....................)))...... ( -14.45)
>DroYak_CAF1 73976 81 - 1
CUUU------UCCAUUCCCUUU-----CGGGGAA-AAUUCAACAUCCUAGUAAAGGACACCGCAAAUCCUGCGCACAAAUCCCCUGCACAAAU
....------............-----.(((((.-.........((((.....))))...((((.....))))......)))))......... ( -16.30)
>consensus
CUUUUUCCAUUCCAUUCCCUUUUUUUUUGGGGAA__AUUCAACAUCCUGGUAAAGGACACCGCAAAUCCUUCACACAAAUCCCCUGCACAAAU
..............((((((........))))))..........((((.....))))....(((....................)))...... ( -9.30 =  -9.42 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:40 2006