Locus 2751

Sequence ID 2R_DroMel_CAF1
Location 9,629,522 – 9,629,632
Length 110
Max. P 0.896295
window4561

overview

Window 1

Location 9,629,522 – 9,629,632
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 80.87
Mean single sequence MFE -27.24
Consensus MFE -19.48
Energy contribution -21.84
Covariance contribution 2.36
Combinations/Pair 1.13
Mean z-score -2.02
Structure conservation index 0.72
SVM decision value 0.99
SVM RNA-class probability 0.896295
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9629522 110 - 20766785
AUUGGAUUUACAAUUUGUUAAAAAACGCCGAUGGGCGUUAUAUAUGUGAUUUUAGUUGGUGGCUAGUGGGAAAUGAACACCUGCAAAAGUCGCGUCAAUUGAAUUACAUU
((((......)))).........((((((....))))))....(((((((((.(((((((((((.(..((.........))..)...))))))..)))))))))))))). ( -28.60)
>DroSec_CAF1 28478 110 - 1
AUUGGAUUUACAAUUUGUUAAAAAACGCCGAUGGGCGUUAUAGUUGUGAUUUUAGUUGGUGGGUAGUGGGAAAUGAACACCUGCUAAAGUCACGUCAAUUGAAUUACAUU
(((.((((.((............((((((....))))))......(((((((((((.((((..((........))..)))).))))))))))))).)))).)))...... ( -34.10)
>DroSim_CAF1 49529 110 - 1
NNNNNNNNNNNNNNNNNNNAAAAAAAGCCGAUGGGCGUUAUAUAUGUGAUUUUAGUUGGUGGGUAGUGGGAAAUGAACACCUGCUAAAGUCACGUCAAUUGAAUUACAUU
..........................(((....))).......(((((((((((((.((((..((........))..)))).)))))))))))))............... ( -27.70)
>DroEre_CAF1 28562 108 - 1
AUUGGGUUUACAAUUUGUUAAAAAGCGCGGAUGGGCGUCAUA--GGCUAUUUUAGUUGGUGGGUAGUGGGAAAUGAACACCUGCUAAAGACAAGUCAAUUGAAUUAUUUU
..........(((((.........((((......))))....--((((.(((((((.((((..((........))..)))).)))))))...)))))))))......... ( -22.60)
>DroYak_CAF1 37968 100 - 1
AUUGCACUUACAAUUUGUUAAAAAGCGCUGAUGGGCGUAA---------UGUUAGUUGGUGUGUAGUGGGAAAUGAACACCUGCUAAAGACACGUCAAUCGAAUUACUU-
...((.(((((.....))....))).))((((.(((((..---------..(((((.(((((...((.....))..))))).)))))....))))).))))........- ( -23.20)
>consensus
AUUGGAUUUACAAUUUGUUAAAAAACGCCGAUGGGCGUUAUA__UGUGAUUUUAGUUGGUGGGUAGUGGGAAAUGAACACCUGCUAAAGUCACGUCAAUUGAAUUACAUU
.......................((((((....))))))......(((((((((((.((((..((........))..)))).)))))))))))................. (-19.48 = -21.84 +   2.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:36 2006