Locus 2746

Sequence ID 2R_DroMel_CAF1
Location 9,594,312 – 9,594,410
Length 98
Max. P 0.594636
window4550

overview

Window 0

Location 9,594,312 – 9,594,410
Length 98
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 90.96
Mean single sequence MFE -27.64
Consensus MFE -20.10
Energy contribution -20.94
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.87
Structure conservation index 0.73
SVM decision value 0.12
SVM RNA-class probability 0.594636
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9594312 98 - 20766785
CAUCCUUUCCUUCCUGCUGCGCUUU-------GCCAGAUGCCAAUGCACUCUGUGCAGUCCAGUUGGAAAAGCGUUUCAGGUGCUUUCCUUGCUGCCAGAUAUUU
.(((........((((..(((((((-------(((((((((....))).)))).))..(((....))))))))))..)))).((.......)).....))).... ( -27.90)
>DroSec_CAF1 9448 96 - 1
CAUCAUUUCCUUCCUGCUGCGCUUU-------GCCAGAUGCAAAUGCACUCU--GCAGUCCAGUUGGAAAAGCGUUUCAGGGGCUUUCCUUGCUGCCAGAUAUUU
.(((........((((..(((((((-------((.((((((....))).)))--))..(((....))))))))))..))))(((..........))).))).... ( -30.40)
>DroSim_CAF1 17521 96 - 1
CAUCAUUUCCUUCCUGCUGCGCUUU-------GCCAGAUGCCAAUGCACUCU--GCAGUCCAGUUGGAAAAGCGUUUCAGGGGCUUUCCUUUCUACCAGAUAUUU
..........((((((..(((((((-------.((((.((....(((.....--)))...)).)))).)))))))..))))))...................... ( -25.40)
>DroEre_CAF1 9376 96 - 1
CAUCCUUUCCUUCCUGCUGCGCUGU-------GCCAGAUGCCAAUGCACUCU--GCAGUCCAGUUGGAAAAGCGUUUUACGGGCUUUUCUCGCUGCCAGAUAUUU
.(((...........((((((..((-------((...........))))..)--))))).((((.((((((((.(.....).)))))))).))))...))).... ( -26.60)
>DroYak_CAF1 19005 103 - 1
CAUCCUUUCCUUCCUGCUGCGCCUUGCCAAAUGCCAGAUGCCAAUGCACUCU--GCCGUCCAGUUGGAAAAGCGUUUCAGGGGCUUUUCUCGCUGCCAGAUAUUU
.(((........((((..((((....(((((((.(((((((....))).)))--).)))....))))....))))..))))(((..........))).))).... ( -27.90)
>consensus
CAUCCUUUCCUUCCUGCUGCGCUUU_______GCCAGAUGCCAAUGCACUCU__GCAGUCCAGUUGGAAAAGCGUUUCAGGGGCUUUCCUUGCUGCCAGAUAUUU
.(((........((((..(((((((.......((..(((((....))).))...))..(((....))))))))))..))))(((..........))).))).... (-20.10 = -20.94 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:25 2006