| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,591,999 – 9,592,096 |
| Length | 97 |
| Max. P | 0.767582 |
| Location | 9,591,999 – 9,592,096 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 94.67 |
| Mean single sequence MFE | -23.95 |
| Consensus MFE | -20.46 |
| Energy contribution | -20.52 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.767582 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9591999 97 + 20766785 CUGCUGCUCCUGCUCCGACUCCAGCUACCAUGUACUGGUUGCCUCCCUUUUAGGUGUCCGUCCCAGAUGUUUGUCUUGUCAUGCCCACCUACAGCAU .(((((.................((.((((.....)))).))........((((((..(((..(((((....))).))..)))..))))))))))). ( -24.20) >DroSec_CAF1 7167 97 + 1 CUGCAGCUCUUGCUCCUACUGCAGCUUCCAUGUACUGGUUGCCUCCCUUUUAGGUGUCCGUCCCAGAUGUUUGUCUUGUCAUGCCCACCUACAGCAU .((((((....)))......((((((..........))))))........((((((..(((..(((((....))).))..)))..))))))..))). ( -22.60) >DroSim_CAF1 15250 97 + 1 CUGCUGCUCCUGCUCCUACUCCAGCUUCCAUGUACUGGUUGCCUCCCUUUUAGGUGUCCGUCCCAGAUGUUUGUCUUGUCAUGCCCACCUACAGCAU .(((((.................((..(((.....)))..))........((((((..(((..(((((....))).))..)))..))))))))))). ( -22.50) >DroEre_CAF1 7136 96 + 1 CUGCUGCUCCUGCUGCAGCUUCAGCUUCUAUGUACUGGUUGCCUCCCU-UUAGGUGUCCGUCCCAGAUGUUUGUCUUGUCAUGCCCACCUACAGCAU .(((((........((((((...((......))...))))))......-.((((((..(((..(((((....))).))..)))..))))))))))). ( -26.50) >consensus CUGCUGCUCCUGCUCCUACUCCAGCUUCCAUGUACUGGUUGCCUCCCUUUUAGGUGUCCGUCCCAGAUGUUUGUCUUGUCAUGCCCACCUACAGCAU .(((((.................((..(((.....)))..))........((((((..(((..(((((....))).))..)))..))))))))))). (-20.46 = -20.52 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:22 2006