Locus 2737

Sequence ID 2R_DroMel_CAF1
Location 9,583,427 – 9,583,547
Length 120
Max. P 0.821837
window4538

overview

Window 8

Location 9,583,427 – 9,583,547
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -57.37
Consensus MFE -54.81
Energy contribution -54.37
Covariance contribution -0.44
Combinations/Pair 1.05
Mean z-score -1.92
Structure conservation index 0.96
SVM decision value 0.68
SVM RNA-class probability 0.821837
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9583427 120 - 20766785
GGUAUCGGGUGGUUGAGCGCCAAUGGAGCCGCCGGCGCAGCUCUGCUGGCAGCGGCUGGAGGUGGUUUCGGUGGUGCGAUGGUCGGCUCGAAUGGUGCCGCCAACGGAAACAACGGGGCU
(((((((..(((((((((((((.((((((((((..(.((((((((....))).)))))).)))))))))).)))))).....))))).))..)))))))(((...(....).....))). ( -57.80)
>DroSim_CAF1 7029 120 - 1
GGUAUCGGGUGGUUGAGCGCCAAUGGAGCCGCCGGCGCAGCUCUGCUGGCAGCGGCUGGAGGUGGUUUCGGUGGUGCGAUGGUCGGCUCGAAUGGCGCCGCCAACGGAAACAACGGGGCU
.((.((((((.(....((((((.((((((((((..(.((((((((....))).)))))).)))))))))).))))))......).))))))...))(((.((...(....)...))))). ( -56.50)
>DroYak_CAF1 8061 120 - 1
GGAAUCGGGUGGUUGAGCGCCAAUGGAGCCGCCGGCGCAGCUCUGCUGGCAGCGGCUGGAGGUGGUUUCGGUGGUGCGAUGGUUGGCUCGAAUGGCGCUGCCAAUGGAAACAGCGGGGCU
....((((((.(....((((((.((((((((((..(.((((((((....))).)))))).)))))))))).))))))......).))))))..(((.((((...((....)))))).))) ( -57.80)
>consensus
GGUAUCGGGUGGUUGAGCGCCAAUGGAGCCGCCGGCGCAGCUCUGCUGGCAGCGGCUGGAGGUGGUUUCGGUGGUGCGAUGGUCGGCUCGAAUGGCGCCGCCAACGGAAACAACGGGGCU
....((((((.(....((((((.((((((((((..(.((((((((....))).)))))).)))))))))).))))))......).)))))).....(((.((...(....)...))))). (-54.81 = -54.37 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:14 2006