Locus 2734

Sequence ID 2R_DroMel_CAF1
Location 9,580,032 – 9,580,152
Length 120
Max. P 0.510955
window4533

overview

Window 3

Location 9,580,032 – 9,580,152
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 89.83
Mean single sequence MFE -41.37
Consensus MFE -34.70
Energy contribution -35.14
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.77
Structure conservation index 0.84
SVM decision value -0.04
SVM RNA-class probability 0.510955
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9580032 120 - 20766785
AGGUGCAGCAGUCACCUCAGCAGUCUGCCCCUCAAUCCCCACCUGCUCCACCGCUGCCACAAGCAGCACCUGUGCCGGCACAAAAUGGUAAUGGCAAUGGCAGUACAAGUGGAGCCGGAU
(((.(((((.((.......)).).)))).))).........((.(((((((.(((((((...((((...))))((((..((......))..))))..)))))))....))))))).)).. ( -42.60)
>DroSim_CAF1 3432 114 - 1
AGGUGCAGCAGUCACCUCAGCAGUCUGCCCCUCAAUCCCCGCCUGCUCCACCGCUGCCACAGGCAGCACCUGUGCCGGCACAAAAU------GGCAAUGGCAGUACAAGUGGUGCCGGAU
(((.(((((.((.......)).).)))).))).........((.((.((((.(((((((((((.....))))(((((........)------)))).)))))))....)))).)).)).. ( -40.20)
>DroYak_CAF1 4546 108 - 1
AGGUGCUGCAGCCACCUCAGCAGUCUGCCCCUCAAUCCCCGCCUGCUCCACCGCUGCCACAGGCAGCACCUGUGCCGGCACAAAAU------------GGCAGUACAAGUGGAGCCGGAA
.((((((((..........)))))..)))............((.(((((((.((((((...))))))...(((((.(.((.....)------------).).))))).))))))).)).. ( -41.30)
>consensus
AGGUGCAGCAGUCACCUCAGCAGUCUGCCCCUCAAUCCCCGCCUGCUCCACCGCUGCCACAGGCAGCACCUGUGCCGGCACAAAAU______GGCAAUGGCAGUACAAGUGGAGCCGGAU
(((.(((((.((.......)).).)))).))).........((.(((((((.(((((.....)))))...(((((.(.(...................).).))))).))))))).)).. (-34.70 = -35.14 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:09 2006