Locus 2731

Sequence ID 2R_DroMel_CAF1
Location 9,576,583 – 9,576,684
Length 101
Max. P 0.833149
window4527

overview

Window 7

Location 9,576,583 – 9,576,684
Length 101
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 84.16
Mean single sequence MFE -29.87
Consensus MFE -27.34
Energy contribution -27.23
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.40
Structure conservation index 0.92
SVM decision value 0.72
SVM RNA-class probability 0.833149
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9576583 101 + 20766785
------------UCCACGUCUUCGUGUUGCAUGCACCCAUCAAGUGGGAACUGCAU-------GAUGUAGUUGCAACUGAGCACUGCACGUGGAUUUACUAGACGGUUUAACUUAAAAAC
------------(((((((..........(((((((((((...)))))...)))))-------)..(((((.((......)))))))))))))).......................... ( -29.60)
>DroSim_CAF1 1 101 + 1
------------UUCACGUAUUCGUGUUGCAUGCACCCAUCGAUUGGGAACUGCAU-------GAUGUAGUUGCAACUGAGCACUGCACGUGGAUUUACUAGACGGUUUAACUUAAAAAC
------------(((((((..........((((((((((.....))))...)))))-------)..(((((.((......)))))))))))))).......................... ( -27.60)
>DroYak_CAF1 1161 120 + 1
CAAUUGCACGAAUUCACGCAUUCGUGUUGCAUGCCCCCAUCGAGUGGGAACUGCAUAAUGCGUGAUGUAGUUGUAACUGAGCACUGCACGUGGAUUAACUAGACGGUUUAACUUAAAAAC
......((((...(((((((((.....((((.(..(((((...)))))..))))).)))))))))((((((.((......))))))))))))............................ ( -32.40)
>consensus
____________UUCACGUAUUCGUGUUGCAUGCACCCAUCGAGUGGGAACUGCAU_______GAUGUAGUUGCAACUGAGCACUGCACGUGGAUUUACUAGACGGUUUAACUUAAAAAC
............(((((((..(((.(((((.....((((.....))))((((((((........))))))))))))))))((...))))))))).......................... (-27.34 = -27.23 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:03 2006