Locus 2721

Sequence ID 2R_DroMel_CAF1
Location 9,535,406 – 9,535,500
Length 94
Max. P 0.601915
window4512

overview

Window 2

Location 9,535,406 – 9,535,500
Length 94
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 91.03
Mean single sequence MFE -14.59
Consensus MFE -11.50
Energy contribution -11.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.79
SVM decision value 0.14
SVM RNA-class probability 0.601915
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9535406 94 - 20766785
CACACAGUAUCCGCAAAAAAAGGUUGCAACCCCAAA--AAAGGUGCUUUAAAAUAUUAAGCAAG-----CCAGCAG-UACUCAGAUACAAUUGGAACAUUCA
......(((((.((((.......)))).........--...(((((((.........))))..)-----)).....-......))))).............. ( -13.30)
>DroSec_CAF1 12279 99 - 1
CACACAGUAUCCGCAAA-AAAGGUUGCAACCCCAAA--AAAGGUGCUUUAAAAUAUUAAGCAAGCCAAGCCAGCAGAUACUCAGAUACAAUUGGAACAUUCA
.....((((((.((...-...(((....))).....--...(((((((.........))))..)))......)).))))))..................... ( -15.70)
>DroSim_CAF1 11150 101 - 1
CACACAGUAUCCGCAAA-AAAGGUUGCAACCCCAAAAAAAAGGUGCUUUAAAAUAUUAAGCAAGCCAAGCCAGCAGAUACUCAGAUACAAUUGGAACAUUCA
.....((((((.((...-...(((....)))..........(((((((.........))))..)))......)).))))))..................... ( -15.70)
>DroEre_CAF1 14009 95 - 1
CACACAGUAUCCGCAAA--AAGGUUGCAACCCCAAAAAAAAGGUGCUUUAAAAUAUUAAGCAAG-----CCACCAGAUACACAGAUACAAUAAGAACAUUCA
......(((((......--..(((.((....((........))(((((.........))))).)-----).))).........))))).............. ( -13.93)
>DroYak_CAF1 13227 93 - 1
CACACAGUAUCCGCAAA--AAGGUUGCAACCCCAAA--AAAGGUGCUUUAAAAUAUUAAGCAAG-----CCACCAGAUACCCAGAUACAAAUGAAACACUCA
......(((((......--..(((.((.(((.....--...)))((((.........))))..)-----).))).........))))).............. ( -14.33)
>consensus
CACACAGUAUCCGCAAA_AAAGGUUGCAACCCCAAA__AAAGGUGCUUUAAAAUAUUAAGCAAG_____CCAGCAGAUACUCAGAUACAAUUGGAACAUUCA
......(((((.((((.......))))................(((((.........))))).....................))))).............. (-11.50 = -11.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:49 2006