Locus 2717

Sequence ID 2R_DroMel_CAF1
Location 9,528,932 – 9,529,025
Length 93
Max. P 0.574347
window4506

overview

Window 6

Location 9,528,932 – 9,529,025
Length 93
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 80.68
Mean single sequence MFE -28.92
Consensus MFE -13.25
Energy contribution -13.42
Covariance contribution 0.17
Combinations/Pair 1.19
Mean z-score -2.50
Structure conservation index 0.46
SVM decision value 0.08
SVM RNA-class probability 0.574347
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9528932 93 + 20766785
CUGCGGUUGCCGGUGAAAAUCGCUGCAAAUUGCGGC-CGCUUGCAGCAAG-CC-GGUGCAACAUGCAAAACAAGAAAGCAACAUCGCAAUCGCCAU
..((((((((((((....)))).((((..(((((.(-((((((...))))-.)-)))))))..))))..................))))))))... ( -32.40)
>DroSec_CAF1 5991 87 + 1
CUGCGGUUGCCGGUGAAAAUCGCUGCAAAUUGCGGC-CGCCUGCAGCCAG-CC-GGUGCAACAUGCAAAACAAGAAAGCAACAUCG------CCGU
..((((((((.((((......(((((.....)))))-)))).)))))).)-)(-((((.....(((...........)))....))------))). ( -30.90)
>DroEre_CAF1 7536 83 + 1
CUGCGGUUGCCGGUGAAAAGCGCUGCAAAUUGCGGC-CGCUUGUA----G-CC-GGUGCAACAUGCAAAACAAGAAAGCAACAUCG------CCAC
..((((((((((((...(((((((((.....)))).-)))))...----)-))-).(((.....)))..........)))))..))------)... ( -31.10)
>DroYak_CAF1 6641 84 + 1
CUGCGGUUGCCGGUGAAAAUCGCUGCAAAUUGCGGCCCGCUUGUA----G-CC-GGUGCAACAUGCAAAACAAGAAAGCAACAUCG------CCAG
..((((((((((((....)))).((((..(((((.((.((.....----)-).-)))))))..))))..........)))))..))------)... ( -26.50)
>DroMoj_CAF1 130397 89 + 1
CUGCGGUUGGCAGUGAAAAUCAUUGCAAAUUACGGC-CAACAAUUGGAAGCCCGGCUGCAACAUGCAAAACAAGAAAGCAACAACA------ACAA
.((((((((((((((.....)))))).......(((-...(....)...)))))))))))...(((...........)))......------.... ( -22.70)
>DroPer_CAF1 24438 79 + 1
CGGCUGGUGGCAGUGAAAAUCGCUGCAAAUUGCGGC-CA-UUGUGGCCGG----GGUGCAACAUGCAAAACAAGAAAGCAACAGC-----------
..((((...((((((.....))))))...(((((((-(.-....))))(.----..(((.....)))...)......))))))))----------- ( -29.90)
>consensus
CUGCGGUUGCCGGUGAAAAUCGCUGCAAAUUGCGGC_CGCUUGUAGC_AG_CC_GGUGCAACAUGCAAAACAAGAAAGCAACAUCG______CCAU
((((((((..(((((.....)))))..)))))))).....................(((.....)))............................. (-13.25 = -13.42 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:43 2006