Locus 2712

Sequence ID 2R_DroMel_CAF1
Location 9,520,234 – 9,520,339
Length 105
Max. P 0.623634
window4488

overview

Window 8

Location 9,520,234 – 9,520,339
Length 105
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 81.92
Mean single sequence MFE -17.75
Consensus MFE -13.52
Energy contribution -13.30
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -1.61
Structure conservation index 0.76
SVM decision value 0.18
SVM RNA-class probability 0.623634
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9520234 105 + 20766785
---------------AAGUCGCACCAAUUUUUAGAGCGGUAGCUUUUUUCCUUUACACUGAUUUUGUCUCCUCUCAUCUCUCACUCUCAUUUUGGGUCCCUGCUCUGAACUACUCCAAAA
---------------..............((((((((((..((((..............((...((........))..)).............))))..))))))))))........... ( -15.63)
>DroSec_CAF1 16881 114 + 1
CUAAAAAAGAUAUGAAUAUCCCACAAAUUUUUAGAGCGGU------UUUUCUUUACUCUGAUUUUGUAUCCUCUCAUCUCUCACUCUCAUUUUGGGUCUCUGCUCUGAGUUACUCCAAAA
.......(((.((((.......(((((...((((((..(.------......)..)))))).)))))......)))).)))........(((((((((((......)))..)).)))))) ( -19.42)
>DroSim_CAF1 17217 114 + 1
CUAAAAAAGAUAUGAAUAUCCCACCAAUUUUUAGAGCGGU------UUUUCUUUACUCUGAUUUUGUAUCCUCUCAUCUCUUACUCUCAUUUUGGGUCUCUGCUCUGAGUUACUCCAAAA
......((((.((((.........(((...((((((..(.------......)..))))))..))).......)))).)))).......(((((((((((......)))..)).)))))) ( -18.19)
>consensus
CUAAAAAAGAUAUGAAUAUCCCACCAAUUUUUAGAGCGGU______UUUUCUUUACUCUGAUUUUGUAUCCUCUCAUCUCUCACUCUCAUUUUGGGUCUCUGCUCUGAGUUACUCCAAAA
.............................((((((((((....................((...((........))..))..((((.......))))..))))))))))........... (-13.52 = -13.30 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:26 2006