Locus 2711

Sequence ID 2R_DroMel_CAF1
Location 9,518,376 – 9,518,482
Length 106
Max. P 0.921036
window4487

overview

Window 7

Location 9,518,376 – 9,518,482
Length 106
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.53
Mean single sequence MFE -26.55
Consensus MFE -24.20
Energy contribution -24.45
Covariance contribution 0.25
Combinations/Pair 1.04
Mean z-score -1.83
Structure conservation index 0.91
SVM decision value 1.14
SVM RNA-class probability 0.921036
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9518376 106 - 20766785
GCC--------------UUUCCCCAAAUCCCCUCUUAUAUUGCGCUUAAAUAUUUAUGAGCUACACGUGACGAUGGCUGAAAGCCAUGAAAUUGUCGCUAAGCGAUGAGCGGAAAACAAA
...--------------..........(((.(((....((((((((((........))))).....(((((((((((.....)))).....)))))))...)))))))).)))....... ( -27.30)
>DroSim_CAF1 15430 106 - 1
GCC--------------AUUCCCCAAAUCCCCUCUUAUAUUGCGCUUAAAUAUUUAUGAGCUACACGUGACGAUGGCUGAAAGCCAUGAAAUUGUCGCUAAGCGAUGAGCGGAAAACAAA
...--------------..........(((.(((....((((((((((........))))).....(((((((((((.....)))).....)))))))...)))))))).)))....... ( -27.30)
>DroEre_CAF1 15363 106 - 1
UCC--------------ACUCCCCAAAUCCUCUUUUAUAUUGCGCUUAAAUAUUUAUGAGCUACACGUGACGAUGGCUGAAAGCCAUGAAAUUGUCGCCAAGCGAUGAGCUGAAAACAAA
...--------------....................(((((((((((........))))).....(((((((((((.....)))).....)))))))...))))))............. ( -22.30)
>DroYak_CAF1 15289 119 - 1
CCCCAACCCCCUUCAGCACU-CCCAAAUCCCCUUUUAUAUUGCGCUUAAAUAUUUAUGAGCUACACGUGACGAUGGCUGAAAGCCAUGAAAUUGUCGCUAAGCGAUGAGCUGAAAACAAA
...........((((((...-...(((......))).(((((((((((........))))).....(((((((((((.....)))).....)))))))...)))))).))))))...... ( -29.30)
>consensus
GCC______________ACUCCCCAAAUCCCCUCUUAUAUUGCGCUUAAAUAUUUAUGAGCUACACGUGACGAUGGCUGAAAGCCAUGAAAUUGUCGCUAAGCGAUGAGCGGAAAACAAA
...........................(((.(((....((((((((((........))))).....(((((((((((.....)))).....)))))))...)))))))).)))....... (-24.20 = -24.45 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:25 2006