Locus 2707

Sequence ID 2R_DroMel_CAF1
Location 9,514,505 – 9,514,623
Length 118
Max. P 0.598796
window4475

overview

Window 5

Location 9,514,505 – 9,514,623
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.68
Mean single sequence MFE -33.44
Consensus MFE -29.10
Energy contribution -28.74
Covariance contribution -0.36
Combinations/Pair 1.09
Mean z-score -1.23
Structure conservation index 0.87
SVM decision value 0.13
SVM RNA-class probability 0.598796
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9514505 118 - 20766785
G--UGUGUGGCCAGGUUUUAGCCUUGAUUGAUUCGAAACCGAGUUUAGUUAGCCCGAGAAACCGUAAGGGGUAGCAGAGAUCAAUGCACAGAGAGAAAUCAAUGUGCACUACCUCGAUAG
.--.....(((.((((....))))(((((((((((....)))).))))))))))(((....((....))(((((..(....)..((((((..((....))..)))))))))))))).... ( -34.50)
>DroSec_CAF1 11504 118 - 1
G--UGUGUGGCCAGGUUUUAGCCUUGAUUGAUUCGAAACCGAGUUUAGUUAGCCCGAGAAACCGUAAGGGGUAGCAGAGAUCAAUGCACAGAGAGAAAUCAAUGUGCACUACCUCGACCA
.--....(((.(.((((((.(..((((((((((((....)))).))))))))..)..))))))....(((((((..(....)..((((((..((....))..)))))))))))))).))) ( -35.70)
>DroSim_CAF1 11550 120 - 1
GUGUGUGUGGCCAGGUUUUAGCCUUGAUUGAUUCGAAACCGAGUUUAGUUAGCCCGAGAAACCGUAAGGGGUAGCAGAGAUCAAUGCACAGAGAGAAAUCAAUGUGCACUAUCUCGAUAA
......(.(((.((((....))))(((((((((((....)))).)))))))))))(..(..((....))..)..).(((((...((((((..((....))..))))))..)))))..... ( -35.60)
>DroEre_CAF1 11792 117 - 1
---UGUGUGGCCAGGUUUUAGCCUUGAUUGAUUCGAAACCGAGUUUAGUUAGCCCGAGAAACUGUAAGGGGUAGCAGAGAUCAAUGCACACAGAGAAAUCAAUGUGUUCUACAUUGAUAC
---((((((....(((....)))((((((((((((....))))))..((((.(((............))).))))...))))))..)))))).....(((((((((...))))))))).. ( -34.40)
>DroYak_CAF1 11655 117 - 1
---UGUGUGGCCAGGUUUUAGCCUUGAUUGAUUCGAAACCGAGUUUAGUUAGCCCGAGAAACCGUAAGGGGUAGUAGAGAUCAAUGCACAGAGAGAAAUCAAUGUGUUCUUCAUGGAUAC
---((((((((.((((....))))(((((((((((....)))).)))))))))).......((....))................)))))..((....))...((((((.....)))))) ( -27.00)
>consensus
G__UGUGUGGCCAGGUUUUAGCCUUGAUUGAUUCGAAACCGAGUUUAGUUAGCCCGAGAAACCGUAAGGGGUAGCAGAGAUCAAUGCACAGAGAGAAAUCAAUGUGCACUACCUCGAUAA
......((((...(((....)))((((((((((((....))))))..((((.(((............))).))))...)))))).(((((..((....))..))))).))))........ (-29.10 = -28.74 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:14 2006