Locus 2703

Sequence ID 2R_DroMel_CAF1
Location 9,512,441 – 9,512,561
Length 120
Max. P 0.981783
window4467

overview

Window 7

Location 9,512,441 – 9,512,561
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.79
Mean single sequence MFE -27.80
Consensus MFE -26.16
Energy contribution -26.36
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.94
SVM decision value 1.90
SVM RNA-class probability 0.981783
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9512441 120 - 20766785
ACAGUGAACUAAACUAAUUCCCACGCGUCAUAUUGAACCAACAAAAGCAUCAGGAGUAGAAAAAGCUGCGAACCAAGUUAACAGGUUAAAAGCCAACUGCUUUGGUUUGAUUUCGACGGU
...(((...............))).((((..((..((((((....((((...((.((((......))))...)).........(((.....)))...))))))))))..))...)))).. ( -26.76)
>DroSec_CAF1 9505 118 - 1
--AGUGAACUAAACUAAUUCCCACGCGUCAUAUUGAACCAACAAAAGCAUCAGGAGUAGAAAAAACUGCGAACCAAGUUAACAGGUUAACAGCCAACUGCUUUGGUUUGAUUUCGACGGU
--.(((...............))).((((..((..((((((....((((...((.((((......)))).......(((((....)))))..))...))))))))))..))...)))).. ( -26.96)
>DroSim_CAF1 9538 118 - 1
--AGUGAAUUAAACCAAUUCCCACGCGUCAUAUUGAACCAACAAAAGCAGCAGGAGUAGAAAAAGCUGCGAACCAAGUUAACAGGUUAACAGCCAACUGCUUUGGUUUGAUUUCGACGGU
--.(.(((((.....))))).)...((((..((..((((((....(((((..((.((((......)))).......(((((....)))))..))..)))))))))))..))...)))).. ( -31.50)
>DroEre_CAF1 9721 117 - 1
--AGUGAAA-AAACAAAUUCCCACGCGUCAUAUUGAACCAACAAAAGCAUCAGGAGUAGAAAAAGCGGCGAGCCAAGUUAACAGGUUAACAGCCAACUGCUUUGGUUUGAUUUCGACGGU
--.(((...-...........))).((((..((..((((((....((((......((.......))(((.((((.........))))....)))...))))))))))..))...)))).. ( -26.44)
>DroYak_CAF1 9634 117 - 1
--AGUGAAA-AAACAAAUUCCCACGCGUCAUAUUGAACCAACAAAAGCAUCAGGAGUAGAAAAAGCUGCGAACCAAGUUAACAGGUUAACAGCCAACUGCUUUGGUUUGAUUUCGACGGU
--.(((...-...........))).((((..((..(((((.............((((((.....((((..((((.........))))..))))...)))))))))))..))...)))).. ( -27.35)
>consensus
__AGUGAAAUAAACAAAUUCCCACGCGUCAUAUUGAACCAACAAAAGCAUCAGGAGUAGAAAAAGCUGCGAACCAAGUUAACAGGUUAACAGCCAACUGCUUUGGUUUGAUUUCGACGGU
...(((...............))).((((..((..((((((....((((...((.((((......))))...)).........(((.....)))...))))))))))..))...)))).. (-26.16 = -26.36 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:06 2006