Locus 2702

Sequence ID 2R_DroMel_CAF1
Location 9,511,858 – 9,511,975
Length 117
Max. P 0.888796
window4466

overview

Window 6

Location 9,511,858 – 9,511,975
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.26
Mean single sequence MFE -39.42
Consensus MFE -34.06
Energy contribution -34.30
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.57
Structure conservation index 0.86
SVM decision value 0.95
SVM RNA-class probability 0.888796
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9511858 117 - 20766785
UUCUGUUCAUGUUGUUGCCGCUGCCGCGACGCAAGUACAACGGAAAACGAC---GAGCAAGUACAAAUACGAGUACGAGUACGAGUACGAGAGUAUCUCUCGGGUUUUUCGGACGUGGAC
....(((((((((((((.(((....)))((....)).))))(((((((..(---(.((..((((........))))..)).))....((((((...)))))).))))))).))))))))) ( -39.00)
>DroSec_CAF1 8916 111 - 1
UUCUUUUCAUGUUGUUGCCGCUGCCGCGACGCAAGUACAACGGAAAACGGC---GAGCAAGUACAAAUACGAGUAC------GAGUACGAGAGUAUCUCUCGGGUUUUUCGGACGUGGAC
.....((((((((.((((((((((((..((....))....)))....))))---).))))((((........))))------(((..((((((...)))))).....))).)))))))). ( -35.60)
>DroSim_CAF1 8942 117 - 1
UUCUGUACAUGUUGUUGCCGCUGCCGCGACGCAAGUACGACGGAAAACGGC---GAGCAAGUACAAAUACGAGUACGAGUACGAGUACGAGAGUAUCUCUCGGGUUUUUCGGACGUGGAC
...(((((.(((..((((((...(((((((....)).)).)))....))))---))))).)))))..((((....((((...(((..((((((...))))))..)))))))..))))... ( -39.80)
>DroEre_CAF1 9148 117 - 1
UUCUGUUCAUGUUGUUGCCGCUGCCGCGACGCAAGUACAACGGAAAACGGC---GAGCAAGUACAAAUACGAGUACGAGUACGACUACGAGAGUAUCUCUCGGGUUUUUCGGACGUGGAC
....(((((((((.((((((((((((..((....))....)))....))))---).))))((((........))))(((...((((.((((((...)))))))))).))).))))))))) ( -40.10)
>DroYak_CAF1 9057 120 - 1
UUCUGUUCAUGUUGUUGCCGCUGCCGCGACGCAAGUACAACGGAAAACGGCGACGAGCAAGUACAAAUACGAGUACGAGUACGAGUACGAGAGUAUCUCUCGGGUUUUUCGGACGUGGAC
....((((((((((((((((...(((..((....))....)))....)))))))..((..((((........))))..)).((((..((((((...)))))).....))))))))))))) ( -42.60)
>consensus
UUCUGUUCAUGUUGUUGCCGCUGCCGCGACGCAAGUACAACGGAAAACGGC___GAGCAAGUACAAAUACGAGUACGAGUACGAGUACGAGAGUAUCUCUCGGGUUUUUCGGACGUGGAC
....(((((((((((((.(((....)))((....)).))))(((((((............((((........))))...........((((((...)))))).))))))).))))))))) (-34.06 = -34.30 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:05 2006