Locus 270

Sequence ID 2R_DroMel_CAF1
Location 1,664,636 – 1,664,744
Length 108
Max. P 0.524891
window574

overview

Window 4

Location 1,664,636 – 1,664,744
Length 108
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 98.61
Mean single sequence MFE -38.93
Consensus MFE -38.33
Energy contribution -38.14
Covariance contribution -0.19
Combinations/Pair 1.03
Mean z-score -1.61
Structure conservation index 0.98
SVM decision value -0.02
SVM RNA-class probability 0.524891
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1664636 108 - 20766785
ACCUGAAUGCUGCCGCUGUGGCUACUGCAACGAGUUGUUGUUGCUCUGGCCGCUUUAAGCUGCGCGAAAGUUGAGUGAGCUCAGCUUGAGAGUCAAAAUAGCCUAGCG
........((((..((((((((((..(((((((....)))))))..)))))))(((((((((.((.............)).))))))))).........))).)))). ( -38.82)
>DroSec_CAF1 50461 108 - 1
ACGUGAAUGCUGCCGCUGUGGCUACUGCAACGAGUUGUUGUUGCUCUGGCCGCUUUAAGCUGCGCGAAAGUUGAGUGAGCUCAGCUUGAGAGUCAAAAUAGCCUAGCG
.(((....(((((.((((((((((..(((((((....)))))))..)))))))....))).)).(..((((((((....))))))))..).........)))...))) ( -39.80)
>DroSim_CAF1 47741 108 - 1
ACGUGAAUGCUGCCGCUGUGGCUACUGCAACGAGUUGUUGUUGCUCUGGCCGCUUUAAGCUGCGCGAAAGUUGAGUGAGCUCAGCUUGAGAGUCAAAAUAGCCUAGCG
.(((....(((((.((((((((((..(((((((....)))))))..)))))))....))).)).(..((((((((....))))))))..).........)))...))) ( -39.80)
>DroEre_CAF1 54863 108 - 1
ACGUGAAUGCUGCCGCUGUGGCUACUGCAACGAGUUGUUGUUGCUCUGGUCGCUUUAAGCUGCGCGAAAGUUGAGCGAGCUCAGCUUGAGAGUCAAAAUAGCCUAGCG
.(((....(((((.((((((((((..(((((((....)))))))..)))))))....))).)).(..((((((((....))))))))..).........)))...))) ( -37.30)
>consensus
ACGUGAAUGCUGCCGCUGUGGCUACUGCAACGAGUUGUUGUUGCUCUGGCCGCUUUAAGCUGCGCGAAAGUUGAGUGAGCUCAGCUUGAGAGUCAAAAUAGCCUAGCG
........((((..((((((((((..(((((((....)))))))..)))))))(((((((((.((.............)).))))))))).........))).)))). (-38.33 = -38.14 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:10 2006