Locus 27

Sequence ID 2R_DroMel_CAF1
Location 1,195,660 – 1,195,750
Length 90
Max. P 0.564684
window49

overview

Window 9

Location 1,195,660 – 1,195,750
Length 90
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 92.08
Mean single sequence MFE -24.46
Consensus MFE -21.50
Energy contribution -20.62
Covariance contribution -0.88
Combinations/Pair 1.12
Mean z-score -1.39
Structure conservation index 0.88
SVM decision value 0.06
SVM RNA-class probability 0.564684
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1195660 90 - 20766785
AUCACAGUUUUUGCAGAUGAUAUCGCAGAGAUUGGGGGAUCUCCCUGAAACAGGUUAUCAUAGGAGCAGCAAGGCAGC-AAGUCUUAAUCU
.((.((((((((((.(((...)))))))))))))((((....)))))).....(((.((....))..)))(((((...-..)))))..... ( -21.30)
>DroSec_CAF1 12728 90 - 1
AGCACAGUUUUUGCAGAUGAUAUCGCAGAGAUUGGGGGAUCUCCCUGAAACAGGUUGCCAUAGGAGCAACAAGGCAGC-AAGACUCAAUCU
....((((((((((.(((...)))))))))))))((((....))))((.....((((((.............))))))-.....))..... ( -25.52)
>DroSim_CAF1 10508 90 - 1
AGCACAGUCUUUGCAGAUGAUAUCGCAGAGAUUGGGGGAUCUCCCUGAAACAGGUUGCCAUAGGAGCAACAAGGCAGC-AAGACUCAAUCU
....((((((((((.(((...)))))))))))))((((....))))((.....((((((.............))))))-.....))..... ( -28.12)
>DroEre_CAF1 13996 91 - 1
ACCACAGUUUUUGCAGAUGAGAUCGCAGAGAUUGGGGGAUCUCCCCAAAACAGGUUACCAUACGAGCAACAAGGCACCAAAGACUUAAUCU
(((.((((((((((.(((...)))))))))))))((((....))))......)))..........((......))................ ( -22.90)
>consensus
AGCACAGUUUUUGCAGAUGAUAUCGCAGAGAUUGGGGGAUCUCCCUGAAACAGGUUACCAUAGGAGCAACAAGGCAGC_AAGACUCAAUCU
....((((((((((.(((...)))))))))))))((((....)))).....((((((........((......))..........)))))) (-21.50 = -20.62 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:51 2006