Locus 2693

Sequence ID 2R_DroMel_CAF1
Location 9,507,110 – 9,507,230
Length 120
Max. P 0.500000
window4436

overview

Window 6

Location 9,507,110 – 9,507,230
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.33
Mean single sequence MFE -27.90
Consensus MFE -26.24
Energy contribution -26.12
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -1.07
Structure conservation index 0.94
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9507110 120 - 20766785
UUGUUCAAUUAGCAUGCACUCCUUAGUUAUUUGGUACAGUGUAUUUUUUACGAGAGUUCUCGACAAUUUUCGAGCGCUAAAACAAAGAAACCGCGCUCGAUGAUAAAAACCGCGUCCGAC
...........(((((((((((..........))...)))))))((((((((((....)))).......((((((((...............))))))))...))))))..))....... ( -27.76)
>DroSec_CAF1 4158 120 - 1
UUGUUCAAUUAGCAUGCACUACUUAGUUAUUUGGUACAGUGUAUUUUUUACGAGAGUUCUCGACAAUUUUCGAGCGCUAAAACAAAGAAACCGCGCUCGACGAUAAAAACCGCGUCCGAC
...........((((((((((((.........)))..)))))))((((((((((....)))).......((((((((...............))))))))...))))))..))....... ( -27.46)
>DroSim_CAF1 4157 120 - 1
UUGUUCAAUUAGCAUGCACUACUUAGUUAUUUGGUACAGUGUAUUUUUUACGAGAGUUCUCGACAAUUUUCGAGCGCUAAAACAAAGAAACCGCGCUCGACGAUAAAAACCGCGUCCGAC
...........((((((((((((.........)))..)))))))((((((((((....)))).......((((((((...............))))))))...))))))..))....... ( -27.46)
>DroEre_CAF1 4050 120 - 1
UUGUUCAAUUAGCAUGCACUUUUCAGUUAUUUGGUACAGUGUAUUUUUUACGAGAGUUCUCGACAAUUUUCGAGCGCUAAAACAAAGAAACCGCGCUCGGCAUUAAAAACCGCGUCCGAC
...........(((((((((..((((....))))...)))))))((((((((((....)))).......((((((((...............))))))))...))))))..))....... ( -28.26)
>DroYak_CAF1 4145 120 - 1
UUGUUCAAUUAGCAUGCACUCUUUAGUUAUUUGGUACAGUGUAUUUUUUACGAGAAUUGUCGACAAUUUUCGAGCGCUAAAACAAAGAAACCGCGCUCGACGUUAAAAACCGCGUCCGAC
((((((((.((((............)))).)))).)))).(((.....)))((((((((....))))))))((((((...............))))))(((((........))))).... ( -28.56)
>consensus
UUGUUCAAUUAGCAUGCACUACUUAGUUAUUUGGUACAGUGUAUUUUUUACGAGAGUUCUCGACAAUUUUCGAGCGCUAAAACAAAGAAACCGCGCUCGACGAUAAAAACCGCGUCCGAC
...........(((((((((..((((....))))...)))))))((((((((((....)))).......((((((((...............))))))))...))))))..))....... (-26.24 = -26.12 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:35 2006