Locus 269

Sequence ID	2R_DroMel_CAF1
Location	1,664,304 – 1,664,407
Length	103
Max. P	0.926603

overview

Window 3

Location	1,664,304 – 1,664,407
Length	103
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	91.44
Mean single sequence MFE	-26.82
Consensus MFE	-23.15
Energy contribution	-22.96
Covariance contribution	-0.19
Combinations/Pair	1.04
Mean z-score	-2.04
Structure conservation index	0.86
SVM decision value	1.18
SVM RNA-class probability	0.926603
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1664304 103 - 20766785
AAAUGCAGAAAAAUCGAAAAUAAACUCGGAGGCCGCGCUAGAAAACGGAAGGCAACGGAAAAAGUGCAUUCGAGUUCGCAUU------------GCAAUUCUGUAUGUGCUUAAA
..((((((((............((((((((....(((((......((........)).....))))).)))))))).((...------------))..))))))))......... ( -24.00)
>DroSec_CAF1 50129 103 - 1
AAAUGCAGAAAAAUCGAAAAUAAACUCGGAGGCCGCGCUAGAAAACGGAAGGCAACGGAAAAAGUGCAUUCGAGUUCGCAUU------------GCUAUUCUGUAUGUGCUUAAA
..((((((((.((((((......(((((((....(((((......((........)).....))))).)))))))))).)))------------....))))))))......... ( -23.90)
>DroSim_CAF1 47409 103 - 1
AAAUGCAGAAAAAUCGAAAAUAAACUCGGAGGCCGCGCUAGAAAACGGAAGGCAACGGAAAAAGUGCAUUCGAGUUCGCAUU------------GCUAUUCUGUAUGUGCUUAAA
..((((((((.((((((......(((((((....(((((......((........)).....))))).)))))))))).)))------------....))))))))......... ( -23.90)
>DroEre_CAF1 54445 114 - 1
AAAUGCAGAAAAAUCGAAAAUAAACUCGGAGGCCGUGCUAGAAAACGGAAGGCAACGGAA-AAGUGCAUUCGAGUUUGCUUUGAUAUCGCUUUUGCGAUUCUGUAUGUGCUGAAA
..((((((((..((((((..((((((((((..((((........))))...(((.(....-..)))).)))))))))).)))))).((((....))))))))))))......... ( -35.50)
>consensus
AAAUGCAGAAAAAUCGAAAAUAAACUCGGAGGCCGCGCUAGAAAACGGAAGGCAACGGAAAAAGUGCAUUCGAGUUCGCAUU____________GCUAUUCUGUAUGUGCUUAAA
..((((((((............((((((((....(((((......((........)).....))))).)))))))).((...............))..))))))))......... (-23.15 = -22.96 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:09 2006