| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,459,122 – 9,459,219 |
| Length | 97 |
| Max. P | 0.743793 |
| Location | 9,459,122 – 9,459,219 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 78.32 |
| Mean single sequence MFE | -32.48 |
| Consensus MFE | -19.49 |
| Energy contribution | -19.55 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.743793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9459122 97 - 20766785 ---CCAUGCUCAUC---GCGUGAUCAGGUGCAAAUCCAACCAGGAUAAAUGUGCCAAAAACGCUCUGAUCAUCCUGGCGCCGGGAGCGGAGGAAAUGGAAUUU ---((((..((..(---((.((((((((.((..((((.....))))....((.......))))))))))))(((((....))))))))..))..))))..... ( -33.90) >DroSec_CAF1 45967 97 - 1 ---CCAAGCUAAUC---GCGUGGUCAGGUGCAAAUCCAAGCAGGAUAAAUGUGCCAAAAACGCUCUGAUUAUCCUGGCCCCGGGAGCGGAGGAAAUGGAAUUU ---(((..((....---((((.....((..((.((((.....))))...))..))....))))((((....(((((....))))).))))))...)))..... ( -29.50) >DroSim_CAF1 54611 100 - 1 ---CCAUGCCAAUCGCCGCGUGGUCAGGUGCAAAUCCAACCAGGAUACAUGUGCCAAAAACGCACUGAUCAUCCUGGCCCCGGGAGCCGAGGAAAUGGAAUUU ---((((.....(((((.((.(((((((((...((((.....)))).((.((((.......))))))..)).))))))).)).).).)))....))))..... ( -32.10) >DroEre_CAF1 46013 97 - 1 ---CCAUGCCAAUC---GCAUGGUCAGGUGCAAAUCCAGCCAGGACAAGUGCGCCAGGAACGCCUUGAUUAUCCUGGCCCCGGGUGCCGAGGAAAUGGAGUUU ---((((((.....---))))))...........(((((((((((((((.(((.......)))))))....)))))))(((((...))).))...)))).... ( -35.60) >DroYak_CAF1 46374 97 - 1 ---CCAAACCAAUC---GCGUAGUCAGGUGCAAAUCCAAGCAGGACAAGUGCGCCAGGAACGCCUUGAUCAUCCUGGCCCCGGGAGCUGAGGAGAUGGAGUUC ---...........---((((..((.((((((..(((.....)))....)))))).)).))))(((.(((.((((((((....).))).))))))).)))... ( -31.20) >DroAna_CAF1 54896 94 - 1 CUUCCAACCACAUC---UCUUGGCCAGCCAAAAAUGU------GGCGAAAGUGCCAAGAAGGCCUUGAUUAUUUUGGCACCAGGAGCUGAGGAAAUGGAGUUU .(((((.((.((.(---((((((...(((((((....------.((....))(((.....)))........))))))).))))))).)).))...)))))... ( -32.60) >consensus ___CCAAGCCAAUC___GCGUGGUCAGGUGCAAAUCCAACCAGGACAAAUGUGCCAAAAACGCCCUGAUCAUCCUGGCCCCGGGAGCCGAGGAAAUGGAAUUU ...(((..((.(((...((((.....((((((..(((.....)))....))))))....))))...)))..(((((....))))).....))...)))..... (-19.49 = -19.55 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:10 2006