Locus 268

Sequence ID 2R_DroMel_CAF1
Location 1,661,957 – 1,662,056
Length 99
Max. P 0.624470
window572

overview

Window 2

Location 1,661,957 – 1,662,056
Length 99
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -28.68
Consensus MFE -27.70
Energy contribution -27.20
Covariance contribution -0.50
Combinations/Pair 1.11
Mean z-score -1.39
Structure conservation index 0.97
SVM decision value 0.19
SVM RNA-class probability 0.624470
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1661957 99 - 20766785
CUCUGUUAAUUGUUAUGCACAUAAAUUCCAGCUGCUAUGUUCUCGGCAGCGUUGGGAAUUGGAAAUGCAGAUGAGUUGUGGUCGGCUCAAUAAGUUCUC
...............((((....((((((.((((((........))))))....)))))).....))))..(((((((....))))))).......... ( -27.80)
>DroSec_CAF1 47496 99 - 1
CUCUGUUAAUUGUUAUGCACAUAAAUUCCAGCUGCUAUGUUCUCGGCAGCGUUGGGAAUUGGAAAUGCAGAUGAGUUGUGGUCGGCUCAAUAAGUUCUC
...............((((....((((((.((((((........))))))....)))))).....))))..(((((((....))))))).......... ( -27.80)
>DroSim_CAF1 44720 99 - 1
CUCUGUUAAUUGUUAUGCACAUAAAUUCCAGCUGCUAUGUUCUCGGCAGCGUUGGGAAUUGGAAAUGCAGAUGAGUUGUGGCCGGCUCAAUAAGUUCUC
...............((((....((((((.((((((........))))))....)))))).....))))..(((((((....))))))).......... ( -27.30)
>DroEre_CAF1 52139 97 - 1
CUCUGCUAAUUGAUAUGCACAUAAAUUCCAGCCGCUGUGUU--CGGCAGCGUUGGGAAUUGGAAAUGCAGAUGAGUUGUGGUCGGCUCGUCAAAUUCUC
...............((((....((((((...((((((...--..))))))...)))))).....))))(((((((((....)))))))))........ ( -31.80)
>consensus
CUCUGUUAAUUGUUAUGCACAUAAAUUCCAGCUGCUAUGUUCUCGGCAGCGUUGGGAAUUGGAAAUGCAGAUGAGUUGUGGUCGGCUCAAUAAGUUCUC
.........(((((.((((....((((((.((((((........))))))....)))))).....))))...((((((....)))))))))))...... (-27.70 = -27.20 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:08 2006