| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,452,509 – 9,452,600 |
| Length | 91 |
| Max. P | 0.658157 |
| Location | 9,452,509 – 9,452,600 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 83.55 |
| Mean single sequence MFE | -25.80 |
| Consensus MFE | -17.52 |
| Energy contribution | -17.60 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9452509 91 - 20766785 UUUCUUCACUGGCACUUCGGCGAGAAGACAGUGUCUAGACUCUAGAUACAUUCUGUUUGCAUUCCCAUGCG------------GCAGCCUGCUAAUUCCUUUA .........(((((((((.....))))...((((((((...))))))))...(((((.((((....)))))------------))))..)))))......... ( -22.80) >DroSec_CAF1 39352 91 - 1 UUUCUUCGCUGGCACUUCGGCGGGAAGGCACUGUCUAGACUCUAGAUACAUUCUGUUUGCAUUCCCAUGCG------------GCAGCCUGCUAAUUCCUUUA ......((((((....))))))((((((((.(((((((...)))))))....(((((.((((....)))))------------))))..))))..)))).... ( -25.00) >DroSim_CAF1 47872 91 - 1 UUUCUUCGCUGGCACUUCGGCGAGAAGACACUGUCUAGACUCUAGAUACAUUCUGUUUGCAUUCCCAUGCG------------GCAGCCUGCUAAUUCCUUUA (((((.((((((....)))))))))))....(((((((...)))))))((..(((((.((((....)))))------------))))..))............ ( -22.30) >DroEre_CAF1 39737 100 - 1 CU---UUGCUGGCACUUCCUCAAAUAGAUACUGUCUAGACUGUAGAUACAUUCUGUUUGCAUUCCCAUGCGUCAGCGGCAGUGGCAGCCUGCUAAUUCCUUCA ..---..((((.((((.((.((((((((...((((((.....))))))...)))))))).........((....)))).)))).))))............... ( -29.10) >DroYak_CAF1 39878 100 - 1 UU---UCGCUGGCACUUCGUCAAGAAGAUACUGUCUAGACGCUAGAUACAUUCUUUUUGCAUUCCCAUGCGGCAGCGGCAGUGGCAGCCUGCUAAUUCCUUCA ..---..((((.((((((((.(((((((...(((((((...)))))))...)))))))((((....))))....)))).)))).))))............... ( -29.80) >consensus UUUCUUCGCUGGCACUUCGGCGAGAAGACACUGUCUAGACUCUAGAUACAUUCUGUUUGCAUUCCCAUGCG____________GCAGCCUGCUAAUUCCUUUA .......((.(((......(((((.(((...(((((((...)))))))...))).))))).......(((.............)))))).))........... (-17.52 = -17.60 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:05 2006