| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,442,465 – 9,442,559 |
| Length | 94 |
| Max. P | 0.869743 |
| Location | 9,442,465 – 9,442,559 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 86.95 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -19.22 |
| Energy contribution | -19.75 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.869743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9442465 94 + 20766785 AAAAAGAAAAUAACAUAAACCGCUAAUGGUCAUGGCCGUUAAUAAACAGAAAGCCCUAAUUUGGCUCUCGUCUU-UCUUGUGGUUUAUUA-----GUCAA ..............((((((((((((((((....))))))).......((.((((.......)))).)).....-....)))))))))..-----..... ( -23.70) >DroPse_CAF1 29442 92 + 1 AAAAAG--------ACAAACCGCUAAUGGUCAUGGCCGUUAAUAAACAGAAAGCCCUAAUUUGGCUGUGGUCUUUUCUUGUGGUUUAUUAACAGAGCCGA ...(((--------(.((((((((((((((....)))))))..........((((.......))))))))).)).)))).((((((.......)))))). ( -23.90) >DroEre_CAF1 29658 94 + 1 AAAAAGAAAAUAACGUAAACCGCUAAUGGUCAUGGCCGUUAAUAAACAGAAAACCCUAAUUUGGCUCUCGUCUU-UCUUGUGGUUUAUUA-----GCCAG ..............((((((((((((((((....)))))))......(((((((((......)).....)).))-))).)))))))))..-----..... ( -19.10) >DroYak_CAF1 29696 94 + 1 AAAAAGAAAAUAACAUAAACCGCUAAUGGUCAUGGCCGUUAAUAAACAGAAAGCCCUAAUUUGGCUCUCGUCUU-UCUUGUGGUUUAUUA-----GCCAA ..............((((((((((((((((....))))))).......((.((((.......)))).)).....-....)))))))))..-----..... ( -23.70) >DroAna_CAF1 28834 94 + 1 AAGAAGAGAAUAAAAUAAACCGCUAAUGGUCAUGGCCGUUAAUAAACACAAAGCCCUAAUUUGGCUCUCGUCUU-UCUUGUGGUUUAUUA-----ACAAA .............(((((((((((((((((....)))))))..........((((.......))))........-....)))))))))).-----..... ( -22.50) >DroPer_CAF1 30262 92 + 1 AAAAAG--------ACAAACCGCUAAUGGUCAUGGCCGUUAAUAAACAGAAAGCCCUAAUUUGGCUGUGGUCUUUUCUUGUGGUUUAUUAACAGAGCCGA ...(((--------(.((((((((((((((....)))))))..........((((.......))))))))).)).)))).((((((.......)))))). ( -23.90) >consensus AAAAAGAAAAUAACAUAAACCGCUAAUGGUCAUGGCCGUUAAUAAACAGAAAGCCCUAAUUUGGCUCUCGUCUU_UCUUGUGGUUUAUUA_____GCCAA ..............((((((((((((((((....)))))))......(((.((((.......))))....)))......)))))))))............ (-19.22 = -19.75 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:02 2006