Locus 2674

Sequence ID 2R_DroMel_CAF1
Location 9,433,462 – 9,433,553
Length 91
Max. P 0.877359
window4397 window4398

overview

Window 7

Location 9,433,462 – 9,433,553
Length 91
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 81.52
Mean single sequence MFE -22.10
Consensus MFE -13.81
Energy contribution -14.50
Covariance contribution 0.69
Combinations/Pair 1.06
Mean z-score -1.88
Structure conservation index 0.62
SVM decision value 0.23
SVM RNA-class probability 0.646245
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9433462 91 + 20766785
CUCGACUUACAGACUGAGAACAACAGGGUAUGCCAUUUGUGGUUACACAAACAUGUAGCAUAGUAUAGGUCUGAAAAUCGCAGG-AAAUUC------A
(((((.((.((((((....((((...((....))..)))).((((((......))))))........)))))).)).))).)).-......------. ( -20.50)
>DroVir_CAF1 28337 87 + 1
--CAACUUACAGACUGUGAACAACAGGGUAUACCAUUUGUGGUAACACAAACAUGUAGCAUGGUAUAGGUCUGUAAAUUUAAUA-UAGUU--------
--....(((((((((((.....))....(((((((((((((....))))).........)))))))))))))))))........-.....-------- ( -22.50)
>DroGri_CAF1 28729 88 + 1
--AAACUUACAGACUGUGUACAACAAGGUAUACCAUUUGUGGUAACACAAACGUGUAGCAUGGUAUAAGUCUGUAAAUUCAUUAAGAGUU--------
--....(((((((((.(((((..((.(.(((((..((((((....)))))).))))).).))))))))))))))))((((.....)))).-------- ( -26.00)
>DroYak_CAF1 20956 91 + 1
GUCGACUUACAGACUGAGAACAACAGGGUAUGCCAUUUGUGGUUACACAAACAUGUAGCAUAGUAUAGGUCUGAAAAUCGCAGG-AAGUUA------A
(.(((.((.((((((....((((...((....))..)))).((((((......))))))........)))))).)).))))...-......------. ( -19.80)
>DroMoj_CAF1 36906 97 + 1
CACAACUUACUGACUGUGAACAACAGGGUAUACCAUUUGUGGUAACACAAACAUGUAGCAUGGUAUAGGUCUGCAAAUUUAAUA-GAGUACUCCGUGA
(((....((((..((((.....)))).(((.(((.((((((....))))))((((...)))).....))).)))..........-.))))....))). ( -21.00)
>DroAna_CAF1 20686 91 + 1
CUCGACUUACUGACUGAGAACAACAGGGUAUGCCAUUUGUGGUGACACAAACAUGUAGCAUAGUAUAGGUCUGAAAUCGGUAUG-GAGAUC------A
.((..(.((((((.(.(((.......(.(((((((((((((....)))))..)))..))))).).....))).)..)))))).)-..))..------. ( -22.80)
>consensus
CUCAACUUACAGACUGAGAACAACAGGGUAUACCAUUUGUGGUAACACAAACAUGUAGCAUAGUAUAGGUCUGAAAAUUGAAUA_GAGUUC______A
.........((((((....((.....((....)).((((((....))))))...........))...))))))......................... (-13.81 = -14.50 +   0.69)

alignment

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secondary structure

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dotplot

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Window 8

Location 9,433,462 – 9,433,553
Length 91
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 81.52
Mean single sequence MFE -21.74
Consensus MFE -15.22
Energy contribution -15.33
Covariance contribution 0.11
Combinations/Pair 1.16
Mean z-score -2.40
Structure conservation index 0.70
SVM decision value 0.90
SVM RNA-class probability 0.877359
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9433462 91 - 20766785
U------GAAUUU-CCUGCGAUUUUCAGACCUAUACUAUGCUACAUGUUUGUGUAACCACAAAUGGCAUACCCUGUUGUUCUCAGUCUGUAAGUCGAG
.------......-....((((((.(((((......((((((....(((((((....)))))))))))))......((....))))))).)))))).. ( -22.10)
>DroVir_CAF1 28337 87 - 1
--------AACUA-UAUUAAAUUUACAGACCUAUACCAUGCUACAUGUUUGUGUUACCACAAAUGGUAUACCCUGUUGUUCACAGUCUGUAAGUUG--
--------.....-.....(((((((((((.((((((((((.....))(((((....)))))))))))))...(((.....)))))))))))))).-- ( -22.50)
>DroGri_CAF1 28729 88 - 1
--------AACUCUUAAUGAAUUUACAGACUUAUACCAUGCUACACGUUUGUGUUACCACAAAUGGUAUACCUUGUUGUACACAGUCUGUAAGUUU--
--------..........(((((((((((((((((.((...(((.((((((((....))))))))))).....)).))))...)))))))))))))-- ( -25.10)
>DroYak_CAF1 20956 91 - 1
U------UAACUU-CCUGCGAUUUUCAGACCUAUACUAUGCUACAUGUUUGUGUAACCACAAAUGGCAUACCCUGUUGUUCUCAGUCUGUAAGUCGAC
.------......-....((((((.(((((......((((((....(((((((....)))))))))))))......((....))))))).)))))).. ( -22.10)
>DroMoj_CAF1 36906 97 - 1
UCACGGAGUACUC-UAUUAAAUUUGCAGACCUAUACCAUGCUACAUGUUUGUGUUACCACAAAUGGUAUACCCUGUUGUUCACAGUCAGUAAGUUGUG
.(((((..((((.-..........((((...((((((((((.....))(((((....)))))))))))))..))))...........))))..))))) ( -21.45)
>DroAna_CAF1 20686 91 - 1
U------GAUCUC-CAUACCGAUUUCAGACCUAUACUAUGCUACAUGUUUGUGUCACCACAAAUGGCAUACCCUGUUGUUCUCAGUCAGUAAGUCGAG
.------......-.....((((((...........((((((....(((((((....)))))))))))))..((((((....))).))).)))))).. ( -17.20)
>consensus
U______GAACUC_CAUUCAAUUUUCAGACCUAUACCAUGCUACAUGUUUGUGUUACCACAAAUGGCAUACCCUGUUGUUCACAGUCUGUAAGUCGAG
..................((((((.(((((.......(((((....(((((((....)))))))))))).......((....))))))).)))))).. (-15.22 = -15.33 +   0.11)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:58 2006