Locus 2673

Sequence ID 2R_DroMel_CAF1
Location 9,429,375 – 9,429,473
Length 98
Max. P 0.545111
window4396

overview

Window 6

Location 9,429,375 – 9,429,473
Length 98
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 77.45
Mean single sequence MFE -31.62
Consensus MFE -19.85
Energy contribution -21.91
Covariance contribution 2.06
Combinations/Pair 1.08
Mean z-score -1.66
Structure conservation index 0.63
SVM decision value 0.02
SVM RNA-class probability 0.545111
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9429375 98 + 20766785
CUCUGUACAACUCGCUGUUCUAGUUAGUCGCCCGAACCUCGAACGGAACUUGUGGGGGUGUCUAGUGAC-------UAGUGAGGUGUAGGUGUCGCAUCUCGCAC
..........(((((((.((...((((.(((((...((.(((.......))).))))))).)))).)).-------)))))))(((.(((((...)))))))).. ( -29.80)
>DroSec_CAF1 16734 95 + 1
CUCUGUA---CUCGCUGUUCUAGUUAAUCGCCCGAACCUCGAACGGAACUUGUGGGGGUGACUAGUGACUAGUGACUAGUGAGGUGUAGGUGUCG-------CAU
.......---((((((((((((((((.((((((...((.(((.......))).))))))))....))))))).))).))))))(((.......))-------).. ( -30.00)
>DroEre_CAF1 16900 84 + 1
CGCUGUGCACCUCGAUGUUCUAGUUAGUCGCCUAAACCUCGAACGUAACUUGUGGGGGUGG---GUGAC-------UAGUGAGGUGUAGGUGUC-----------
((((.(((((((((.........((((((((((..(((((..(((.....))).)))))))---)))))-------))))))))))))))))..----------- ( -35.30)
>DroYak_CAF1 16876 80 + 1
CUCUUUGCACCUCGACGUUCUAGUUAGUCGCCUAAACCUCGAGCGGAACUUGUGGGG-------GUGAC-------UAGUGAGGUGUAGGUGUC-----------
...(((((((((((((......)))((((((((...((.((((.....)))).))))-------)))))-------)...))))))))))....----------- ( -31.40)
>consensus
CUCUGUACACCUCGAUGUUCUAGUUAGUCGCCCAAACCUCGAACGGAACUUGUGGGGGUG____GUGAC_______UAGUGAGGUGUAGGUGUC___________
.....((((((((((((.........(((((....(((((..(((.....))).))))).....))))).......))))))))))))................. (-19.85 = -21.91 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:57 2006