| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,423,713 – 9,423,814 |
| Length | 101 |
| Max. P | 0.609045 |
| Location | 9,423,713 – 9,423,814 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 68.88 |
| Mean single sequence MFE | -45.80 |
| Consensus MFE | -15.00 |
| Energy contribution | -15.23 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9423713 101 + 20766785 UGGAGCCCAAUACCUCUGUGGAGAUGCGUUUAUUUCGCGUCACCUGUUGGUAAUGA------GUCGACGACGUUG---GAAUUGCACCGGCCGGUACCAAAGCUCCAG---UC ((((((....((((.....((.((((((.......)))))).)).((((((.....------.(((((...))))---)......)))))).)))).....)))))).---.. ( -32.80) >DroPse_CAF1 11770 110 + 1 UGGAGCCCAGCACUUCGGUGGAGAUGCGCUUGUUGCGCGUCACCUGCUGGUAGCUGCUGCUGCUGGCCGCCGCAGAGAUGUUCCCACCUGAGGGGACAAGGGCCCGAC---UC .((.((((....((.(((((..(((((((.....)))))))....((..(((((....)))))..))))))).))...(((((((......))))))).))))))...---.. ( -57.90) >DroEre_CAF1 10995 101 + 1 UGGAGCCCAAAACCUCCGUGGAGAUGCGCUUAUUUCGCGUCACCUGUUGGUAAUGG------CUGGAUGACGAUG---GAAUUGCACCGGCCGGAACCAAAGCUCCAC---UC ((((((.............((.((((((.......)))))).))..(((((..(((------((((.((.((((.---..)))))))))))))..))))).)))))).---.. ( -39.50) >DroMoj_CAF1 21460 98 + 1 UGGAGCCAAGCACCUCCGUGGAGAUGCGCUUGUUGCGCGUCACCUGCUGAUAGCUGC---CGGUA---------G---GAGCACCACUCGAGGGUACCAGGGCGCGACUGCUA ....(((..((.((((.((((.(((((((.....))))))).(((((((........---)))))---------)---)....))))..)))))).....)))((....)).. ( -40.80) >DroAna_CAF1 11170 104 + 1 UGGAGCCCAGCACCUCCGUCGAGAUGCGCUUGUUCCGGGUGACUUGCUGGUAGUGC------GCCGUCGAGGAGGAGCCACUGCCACUGGACGGGACCAGGGCACGGG---UC ....((((.((.(((((.(((((.((((((....((((........)))).)))))------).).))))))))).))...((((.((((......)))))))).)))---). ( -46.60) >DroPer_CAF1 11814 110 + 1 UGGAGCCCAGCACUUCGGUGGAGAUGCGCUUGUUGCGCGUCACCUGCUGGUAGCUGCUGCUGCUGGCUGCCGCAGAGAUGUUUCCACCUGAGGGGACAAGGGCCCGAC---UC .((.((((..(.(((((((((((((((((.....)))))))..((((.(((((((((....)).))))))))))).......)))))).)))).)....))))))...---.. ( -57.20) >consensus UGGAGCCCAGCACCUCCGUGGAGAUGCGCUUGUUGCGCGUCACCUGCUGGUAGCGG______CUGGACGACGAAG___GAAUUCCACCGGACGGGACCAGGGCCCGAC___UC ....((((((((.......((.((((((.......)))))).))))))))....................................((....)).......)).......... (-15.00 = -15.23 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:56 2006