Locus 2662

Sequence ID 2R_DroMel_CAF1
Location 9,399,098 – 9,399,191
Length 93
Max. P 0.649378
window4380

overview

Window 0

Location 9,399,098 – 9,399,191
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 88.33
Mean single sequence MFE -22.65
Consensus MFE -17.17
Energy contribution -18.05
Covariance contribution 0.88
Combinations/Pair 1.11
Mean z-score -1.62
Structure conservation index 0.76
SVM decision value 0.24
SVM RNA-class probability 0.649378
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9399098 93 - 20766785
AAACUGAUCUGACUGAGUUAGUGGGAUUUUCCCCGAAAUAUCCCACAAUUCACUAGUCUCUAUUUAGCUCUUAGUUUUGGAGUAAGGUUACAU
....(((((((((((((((.(((((((((((...)))).))))))))))))...))))........(((((.......))))).))))))... ( -25.60)
>DroSec_CAF1 10973 93 - 1
AAACUGAUCUGACUGAGUUAGUGGGAUUUUCCCGAGAAUACCCCACAAUUCACUAGUCUCUAUUUAGCUCUUAGUUUUGGAGUAAGGUUACAU
....(((((((((((((((.(((((...(((....)))...))))))))))...))))........(((((.......))))).))))))... ( -23.20)
>DroEre_CAF1 10968 92 - 1
AAAGUGAUCUGGCUCAGUUAGUGGGAUUUUCCC-AGGAUACCCCACAAUUAACUAGUCUCUACUUAGCUCUUAGUUUUGGAGUAAGGUUAAAU
....((((((((((.((((((((((....((..-..))...)))))...)))))))))........(((((.......))))).))))))... ( -23.70)
>DroYak_CAF1 10961 92 - 1
AAACUGGUCCGGCUGAGUUUGUGGGAUUUUCCC-AGAACACCCCAAAGUUACCUAGUCUUUAUUUAGCUCUUAGUAUUGGAGUAAGGUUAAAU
..(((((...((((..((((.((((.....)))-).)).)).....))))..)))))....(((((((.((((.(.....).))))))))))) ( -18.10)
>consensus
AAACUGAUCUGACUGAGUUAGUGGGAUUUUCCC_AGAAUACCCCACAAUUAACUAGUCUCUAUUUAGCUCUUAGUUUUGGAGUAAGGUUAAAU
....((((((((((.((((.(((((...(((....)))...)))))....))))))))........(((((.......))))).))))))... (-17.17 = -18.05 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:41 2006