| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,371,882 – 9,371,978 |
| Length | 96 |
| Max. P | 0.678796 |
| Location | 9,371,882 – 9,371,978 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 67.34 |
| Mean single sequence MFE | -22.90 |
| Consensus MFE | -7.79 |
| Energy contribution | -9.35 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9371882 96 + 20766785 UAGUUGUGAUGCACGUUUUGU-GGCGA----------AACAUUCCCGUUUCCAA-------------AUCCAAAUCCGGAAAUGUUUAAUAUACUUUUGGUUACUAACAUGCCUCCAAUA ..((((.((.(((.(((..((-(((((----------(((......)))))...-------------.(((......)))...................))))).))).))).)))))). ( -20.50) >DroSec_CAF1 41863 106 + 1 UAGUUGUAAUGCACGUUUUGU-GGCGAAGGCACACGAAACAUUUCCAUUUCCAA-------------AUCCAAAUCCGGAAAUGUUCAACAUAUUUGUGGUUACGAUCAUACAGCCAAUA ..((((((((.((((((((((-(((....)).)))))))).....(((((((..-------------..........)))))))............)))))))))))............. ( -29.70) >DroSim_CAF1 45178 106 + 1 UAGUUGUAAUGCACGCUUUGU-GGCGAAGGCACACAAAACAUUCCCAUUUCCAA-------------AUCCAAAUCCGGAAAUGUUCAUCAUAUUUGUGGUUACGAUCAUACAGCCAAUA ..((((((((.((((.(((((-(((....)).)))))).).....(((((((..-------------..........)))))))............)))))))))))............. ( -25.80) >DroEre_CAF1 42561 109 + 1 UG-UAGUGAUGCACAUUUUAU-UGCGGAAGCACAUAAAACAUUCCCAUUUACCAUUU---AAAAAGCAUUAAAGUCCGGAAAUAUUUAUCAUAUUUGUGGUUAUUUUUAAUUAG------ ..-...((((((...((((((-(((....))).))))))........((((.....)---)))..))))))....(((.((((((.....)))))).)))..............------ ( -18.20) >DroYak_CAF1 45347 114 + 1 UG---GUUGUUCACAUUUUAUCUUCCGCCAUAAAUGAAACUUUUCCAUUUUCCCUUUACUAAAAAGUAUCGACAUCCGGAAAUGUUUAACAUAUUUGUGGUUACGAUCAUAAAGCCA--- .(---((((....)).(((((..((.((((((((((((((.(((((..........((((....)))).........))))).))))....))))))))))...))..)))))))).--- ( -20.31) >consensus UAGUUGUAAUGCACGUUUUGU_GGCGAAGGCACACAAAACAUUCCCAUUUCCAA_____________AUCCAAAUCCGGAAAUGUUUAACAUAUUUGUGGUUACGAUCAUACAGCCAAUA .....(((((.(((((((((...((....))...)))))).....(((((((.........................)))))))............))))))))................ ( -7.79 = -9.35 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:29 2006