Locus 2654

Sequence ID 2R_DroMel_CAF1
Location 9,367,008 – 9,367,116
Length 108
Max. P 0.500000
window4366

overview

Window 6

Location 9,367,008 – 9,367,116
Length 108
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 79.21
Mean single sequence MFE -29.72
Consensus MFE -18.71
Energy contribution -17.72
Covariance contribution -0.99
Combinations/Pair 1.39
Mean z-score -1.33
Structure conservation index 0.63
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9367008 108 - 20766785
GCACAGCCGCGAUCAAUAAGCUUCUGUUUUUCGGAGCGAUGAAUGAAACCUUUAUAGCCAAGG------CUAUUUCUCUGAUGGUUUGGUGGGAUUUCAAUAUCGUUCGGAUCA
..((((..((.........))..))))...((.((((((((..((((((((.....((((((.------(((((.....)))))))))))))).))))).)))))))).))... ( -30.80)
>DroSec_CAF1 36989 108 - 1
GCACAGCCGCGAUCAAUGAGCUUCUGUUUUUCAGAGCGAUGAAUGAAGCCUCUAUAGCAAAGC------CUAUUUCUCUGAUGGUUUGGUGGGAUUUCAAUAUCGUUCGGAUCA
((......))((((...((((....))))....((((((((..((((((((.....((.((((------(.(((.....)))))))).))))).))))).)))))))).)))). ( -26.90)
>DroSim_CAF1 40338 108 - 1
GCACAGCCGCGAUCAAUGAGCUUCUGUUUUUCGGAGCGAUGAAUGAAGCCUCUAUAGCCAAGC------CUAUUUCUCUGAUGGUUUGGUGGGAUUUCCAUAUCGUUCGGAUCA
((......))((((...((((....))))....((((((((...(((((((.....(((((((------(.(((.....)))))))))))))).))))..)))))))).)))). ( -32.00)
>DroEre_CAF1 37699 108 - 1
GCACAGCCCCGAUCAACAAGUUUCUGCUGUUCGGAACGAUGAAUGAAACCUCUAUAGCCGAGG------CUAUUUCCUUGACGGUUUGGUGGGAUUUCAAUAUCGUUCUGAUCA
..(((((...(((......)))...)))))(((((((((((..(((((((((((.((((((((------......)))...)))))))).))).))))).)))))))))))... ( -32.80)
>DroWil_CAF1 50771 111 - 1
UGACA---ACGUCCAUUCAAUUUCCGUUUCUCAGAAUGAUGUAUAAAUCCUUUGUAACCGUAGCCACAUCUAUCGGGUUUACGUUUCGGGGGCAUUUCCACAUCAUUCUGUUCA
.((.(---(((.............)))))).(((((((((((..((((((((((.((.(((((((.(.......))).))))).)))))))).))))..))))))))))).... ( -28.42)
>DroYak_CAF1 40432 108 - 1
GCACAGCCCCGAUCAAUAAGUUUCUGCUUUUCGGAGCGAUGAAUGAAACCUCUAUAGCCGAGG------CUAUUCACUUGACGAUUUGGCGGGAUUUCAAUAUCGUUCUGAUCA
..........((((...((((....))))...(((((((((..(((((..(((...((((((.------....((....))...)))))).)))))))).))))))))))))). ( -27.40)
>consensus
GCACAGCCGCGAUCAAUAAGCUUCUGUUUUUCGGAGCGAUGAAUGAAACCUCUAUAGCCAAGG______CUAUUUCUCUGACGGUUUGGUGGGAUUUCAAUAUCGUUCGGAUCA
..........((((...((((....))))....((((((((...((((((((((.(((((.....................)))))))).))).))))..)))))))).)))). (-18.71 = -17.72 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:28 2006