Locus 2653

Sequence ID 2R_DroMel_CAF1
Location 9,354,132 – 9,354,230
Length 98
Max. P 0.963473
window4365

overview

Window 5

Location 9,354,132 – 9,354,230
Length 98
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 79.96
Mean single sequence MFE -20.32
Consensus MFE -15.90
Energy contribution -17.70
Covariance contribution 1.80
Combinations/Pair 1.14
Mean z-score -2.15
Structure conservation index 0.78
SVM decision value 1.55
SVM RNA-class probability 0.963473
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9354132 98 + 20766785
U--GAUC-AAAUAUUCCGACCAUAGGUUUGUGGUUUCCCGAAAACUAU-AACCAAAUGGGUGGAAACAAACAAAACCCUUCCAUAUCGAACUUAUUUAUUA---------C
(--(((.-(((((...(((((((.((((.(((((((.....)))))))-))))..))))((((((.............)))))).)))....)))))))))---------. ( -19.12)
>DroSec_CAF1 24311 99 + 1
U--UAUC-AAAAAUUCCGACCAUAGGUUUGUGGUUUCCCGAAAACUAUGAACCAAAUGGGUGGAAACAAACAAAACCCUUCCAUAUCGAGCUUAUUUAUUA---------C
.--....-........(((((((.((((..((((((.....))))))..))))..))))((((((.............)))))).))).............---------. ( -22.02)
>DroSim_CAF1 26019 99 + 1
U--UAUC-AAAAAUUCCGACCAUAGGUCUGUGGUUUCCCGAAAACUAUGAACCAAAUGGGUGGAAACAAACAAAACCCUUCCAUAUCGAGCUUAUUUAUUG---------C
.--....-........(((((((.(((..(((((((.....)))))))..)))..))))((((((.............)))))).))).............---------. ( -19.22)
>DroEre_CAF1 24654 109 + 1
U--UAUCAAGAAAUUCCGACCAUAGGUUUGUGGUUUACCAAAAACUUUAAGCCAAAUGGGUGGAAGCAAACAAAACCCUACCUUGUUGAGCUAAUUUAUUACUCACUAUGU
.--......((...((((.((((.((((((.(((((.....))))).))))))..)))).))))(((.(((((.........)))))..)))..........))....... ( -21.90)
>DroYak_CAF1 27431 102 + 1
UAUGAGUUAAAAAUUCCGACUAUUGGUU---------CCCAAAACUAUGAACCAAAUGGGUGGAAACAAACAAAACCCUUCCAUAUAACGCUAAUUUAUUACUCACUAUAC
..(((((...(((((.((.(((((((((---------(..........))))).)))))((((((.............))))))....))..)))))...)))))...... ( -19.32)
>consensus
U__UAUC_AAAAAUUCCGACCAUAGGUUUGUGGUUUCCCGAAAACUAUGAACCAAAUGGGUGGAAACAAACAAAACCCUUCCAUAUCGAGCUUAUUUAUUA_________C
.............(((((.((((.((((((((((((.....))))))))))))..)))).))))).............................................. (-15.90 = -17.70 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:27 2006