Locus 2652

Sequence ID 2R_DroMel_CAF1
Location 9,351,016 – 9,351,115
Length 99
Max. P 0.661510
window4364

overview

Window 4

Location 9,351,016 – 9,351,115
Length 99
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 87.79
Mean single sequence MFE -21.44
Consensus MFE -18.85
Energy contribution -18.50
Covariance contribution -0.36
Combinations/Pair 1.20
Mean z-score -1.52
Structure conservation index 0.88
SVM decision value 0.27
SVM RNA-class probability 0.661510
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9351016 99 + 20766785
CGAUCUUUUAUAGGCACCGGC-----AAACUCUCCUUCUGAUUGCAAACGCAAAUAGAAGUUUAC-----CAAAGCGACUUACUUUCGCAAGAAAAGUGCAAAUACUCG
.............((((.((.-----(((((.....((((.((((....)))).))))))))).)-----)...((((.......)))).......))))......... ( -21.60)
>DroSec_CAF1 21192 99 + 1
CGAUCUUUUAUAGGCACCGGC-----AAACUCUCCUUCUGAUUGCAAACGCAAAUAGAAGUUUAC-----CAUAGCGACUUACUUUCGCAAGAAAAGUGCAAAUACUCG
.............((((.((.-----(((((.....((((.((((....)))).))))))))).)-----)...((((.......)))).......))))......... ( -21.60)
>DroSim_CAF1 22866 99 + 1
CGAUCUUUUAUAGGCACCGGC-----AAACUCUCCUUCUGAUUGCAAACGCAAAUAGAAGUUUAC-----CAUAGCGACUUACUUUCGCAAGAAAAGUGCAAAUACUCG
.............((((.((.-----(((((.....((((.((((....)))).))))))))).)-----)...((((.......)))).......))))......... ( -21.60)
>DroEre_CAF1 21370 93 + 1
CGAUCUUUUAUAGGCACCGGC-----A-ACUCUCCUUCUGAUUGCAAACGCAAAUAGAACUUUAC-----CAUGGCGACUUACUUUCGCAAGAAAAGUGCAAAU-----
.............((((((.(-----(-.......(((((.((((....)))).)))))......-----..)).))......((((....)))).))))....----- ( -20.16)
>DroYak_CAF1 24337 94 + 1
CGAUCUUUUAUAGGCACCGGC-----A-ACUCUCCUUCUGAUUGCAAACGCAAAUAGAAGCUUACC----CAUAGCGACUUACUUUCGCAAGAAAAGUGCAAAU-----
.............((((.(..-----.-.)(((.((((((.((((....)))).))))))......----....((((.......)))).)))...))))....----- ( -21.00)
>DroAna_CAF1 21286 104 + 1
CGGUCUUUUAUAGGCGUUUGGGGACGGAACUCUUCUUCUGAUUGAAAAAGCAAACAGAAGUUUACCAUACCAUACCGACUUACUUUCGCAAGAAAAGUGCAAAU-----
((((....(((.((..((((....))))......((((((.(((......))).))))))....)))))....))))...(((((((....).)))))).....----- ( -22.70)
>consensus
CGAUCUUUUAUAGGCACCGGC_____AAACUCUCCUUCUGAUUGCAAACGCAAAUAGAAGUUUAC_____CAUAGCGACUUACUUUCGCAAGAAAAGUGCAAAU_____
.............((((..((.............((((((.((((....)))).))))))..............)).......((((....)))).))))......... (-18.85 = -18.50 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:26 2006